Training Workshops Course Material
To learn more about the UC Davis Bioinformatics data analysis services and training program, visit the Bioinformatics Core website. Dates and prices for our upcoming workshops can be found on the Genome Center Event Registration site.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Learn to execute a successful GWAS experiment from design to analysis.
Explore metagenomics and metatranscriptomics with the UC Davis Bioinformatics Core and an exciting slate of expert guest instructors!
Use high-throughput sequencing (HTS) of amplicons to understand the composition and functional content of microbial communities.
An in-depth look at VDJ analysis with single cell RNA-Seq data. Participants must already be familiar with single cell RNA-Seq analysis.
A workshop for biologists preparing to run their first single cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2019 Fall single cell RNA sequencing Workshop @ UCSF
2019 September UCD Microbial Community Analysis Workshop - Amplicons
2019 Alliance for Global Health and Science, Makerere University, Variant Analysis
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
2019 April ESALQ Microbial Community Analysis in Piricicaba, State of Sao Paolo, Brazil
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2019 March @ UCSF mRNAseq Workshop
A primer on using LSSC0
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
HTStream: A toolset for high throughput sequence analysis using a streaming approach.
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
From SNP and structural variant calling to GWAS.
2018 Alliance for Global Health and Science, Makerere University, Microbial Community Analysis
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
2018 May Microbial Community Analysis Workshop @ UCB
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
So you want to do a: Single Cell RNA-seq experiment
October 2017 Microbial Community Analysis Workshop at ILRI Kenya
2017 September Microbial Community Analysis Workshop
From SNP and structural variant calling to GWAS.
RNA Seq Workshop Library Preparation and Introduction to Data Analysis 2, Aug 2017
Alliance for Global Health and Science & Makerere University Summer Workshop, Bioinformatics
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
So you want to do a: Microbial Community Analysis Experiment
So you want to do a: RNAseq experiment, Differential Gene Expression Analysis
A Primer on Using the Bioinformatics Core Administrated Servers and Cluster(s)
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
RNA-Seq Workshop: Library Preparation and Introduction to Data Analysis