Training Workshops Course Material
To learn more about the UC Davis Bioinformatics data analysis services and training program, visit the Bioinformatics Core website. Dates and prices for our upcoming workshops can be found on the Genome Center Event Registration site.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Learn to execute a successful GWAS experiment from design to analysis.
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
So you want to do a: RNAseq experiment, Differential Gene Expression Analysis
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
Course-Workshop (On-Demand). Hands-on Workshop Assembling and Annotating Bacterial Genomes Using PacBio Long Reads
An in-depth look at VDJ analysis with single cell RNA-Seq data. Participants must already be familiar with single cell RNA-Seq analysis.
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
A one-day exploration of a 10x V(D)J experiment for researchers with some knowledge of scRNA-seq experiments
A three day hands-on workshop for researchers interested in single cell RNA-Seq
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
From SNP and structural variant calling to GWAS.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
A one-day exploration of spatial transcriptomics
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
From SNP and structural variant calling to GWAS.
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
A one and half hour seminar on how to use slurm on a cluster.
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
An introduction to R for biologists
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Explore metagenomics and metatranscriptomics with the UC Davis Bioinformatics Core and an exciting slate of expert guest instructors!
A workshop for biologists preparing to run their first single cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
A single-day workshop on Trajectory and Velocity Analyses.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to spatial transcriptomics using 10x Genomics Visium datat.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
UC Davis Bioinformatics Core workshop on RNA-Seq analysis.
2018 Alliance for Global Health and Science, Makerere University, Microbial Community Analysis
A one hour seminar on how to use slurm on a cluster.
Course on differential expression and enrichment analysis in R for GGI graduate students
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
A workshop for biologists preparing to run their first single cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
An in-depth look at VDJ analysis with single cell RNA-Seq data. Participants must already be familiar with single cell RNA-Seq analysis.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Three half-day lessons in R for biologists. No data analysis experience necessary!
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
A workshop for biologists preparing to run their first RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners! Single cell RNA Seq is covered in a separate course.
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. Participants should have some command line and R experience to participate successfully. We recommend our introductory courses for beginners!
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
Use high-throughput sequencing (HTS) of amplicons to understand the composition and functional content of microbial communities.
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
2019 September UCD Microbial Community Analysis Workshop - Amplicons
Three day workshop offered in partnership with PacBio. Learn all about the possibilities of full length isoform sequencing from PacBio experts and experienced Core personnel!
2019 March @ UCSF mRNAseq Workshop
So you want to do a: Single Cell RNA-seq experiment
2019 Fall single cell RNA sequencing Workshop @ UCSF
A primer on using LSSC0
A Primer on Using the Bioinformatics Core Administrated Servers and Cluster(s)
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
RNA-Seq Workshop: Library Preparation and Introduction to Data Analysis
HTStream: A toolset for high throughput sequence analysis using a streaming approach.
2019 Alliance for Global Health and Science, Makerere University, Variant Analysis
2017 September Microbial Community Analysis Workshop
2019 April ESALQ Microbial Community Analysis in Piricicaba, State of Sao Paolo, Brazil
RNA Seq Workshop Library Preparation and Introduction to Data Analysis 2, Aug 2017
2018 May Microbial Community Analysis Workshop @ UCB
October 2017 Microbial Community Analysis Workshop at ILRI Kenya
Alliance for Global Health and Science & Makerere University Summer Workshop, Bioinformatics
So you want to do a: Microbial Community Analysis Experiment