Monday
- Introduction
- Logging In and transferring files
- Intro to command-line
- Advanced command-line
- What is Bioinformatics? (talk)
- Running jobs on the Cluster and using modules
- Intro to Sequencing (talk)
Tuesday
- Files and Filetypes for Genomes/Annotation (talk)
- Experimental Design and Cost Estimation (talk)
- Intro to the Research: Occipitoatlantoaxial Malformation
- Preprocessing Data hands-on
- Philosophy of Preprocessing Data (talk)
Wednesday
- Aligners (talk)
- Aligning Data and IGV
- Files and Filetypes for Genomes/Annotation - sam/bam (talk)
- Genome Assembly and Annotation (talk)
- Variant calling with Freebayes & Delly
- Files and Filetypes for Genomes/Annotation - vcf (talk)
Thursday
Friday
- Intro to R
- Advanced Sequencing and Wet Lab Topics, Lutz Froenicke (talk)
- Variant Analysis with R
- GWAS/Cancer-Seq
- Closing thoughts
Evaluation!
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