UC Davis Bioinformatics Core December 2018 Genome Assembly workshop

UC Davis Genome Center Bioinformatics Core

• Introduction - Matt Settles

• Getting Connected

• Cluster intro - Matt Settles

• Genome Assembly Overview - Matt Settles

• Davis Genome Center - Lutz Froenicke

• KAT and Data QA/QC - Gonzalo Garcia

• Kat example commands

• Genome Scaffolding with HiC -Zev Kronenberg
• Juicebox - Zev Kronenberg

• Falcon Phase - Zev Kronenberg

• Sequencing Technologies - Ruta Sahasrabudhe

• Sequencing Technologies - Diana Burkart-Waco

• Pacific Biosciences Assembly - Joe Fass

• Oxford Nanopore Assembly - Jie Li

• 10X Assembly - Matt Settles

Evaluation

Evaluation