Software
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R Project, Berkeley CRAN
Install from the website -
RStudio
Install from the website - R packages
- tidyr, install.packages(“tidyr”, repos=’http://cran.us.r-project.org’)
- json, install.packages(“json”, repos=’http://cran.us.r-project.org’)
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Anaconda3
Install from website -
conda install bwa
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conda install -c bioconda freebayes
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bcftools conda install -c bioconda bcftools
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conda install -c bioconda snpeff