Alignment Stats
| Sequence pairs analysed in total |
198056601 |
| Paired-end alignments with a unique best hit |
93388505 |
| Pairs without alignments under any condition |
97718489 |
| Pairs that did not map uniquely |
6949607 |
| Genomic sequence context not extractable (edges of chromosomes) |
2 |
|
|
Cytosine Methylation
| Total C's analysed |
4705912213 |
| Methylated C's in CpG context |
161781790 |
| Methylated C's in CHG context |
24566161 |
| Methylated C's in CHH context |
93040204 |
| Methylated C's in Unknown context |
1384306 |
| Unmethylated C's in CpG context |
36707495 |
| Unmethylated C's in CHG context |
1025184113 |
| Unmethylated C's in CHH context |
3364632450 |
| Unmethylated C's in Unknown context |
3632894 |
| Percentage methylation (CpG context) |
81.5% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
2.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
46730941 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
46657562 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
93388503 |
| Unique alignments |
88478121 |
| Duplicates removed |
4910382 |
| Duplicated alignments were found at 3746636 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3464494167 |
| Methylated C's in CpG context |
114586013 |
| Methylated C's in CHG context |
21338090 |
| Methylated C's in CHH context |
80770801 |
| Unmethylated C's in CpG context |
26536143 |
| Unmethylated C's in CHG context |
753176300 |
| Unmethylated C's in CHH context |
2468086820 |
| Percentage methylation (CpG context) |
81.2% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
3.2% |
|
|
M-Bias Plot
