Alignment Stats
| Sequence pairs analysed in total |
4880925 |
| Paired-end alignments with a unique best hit |
4879902 |
| Pairs without alignments under any condition |
103 |
| Pairs that did not map uniquely |
920 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
181977383 |
| Methylated C's in CpG context |
5989125 |
| Methylated C's in CHG context |
259847 |
| Methylated C's in CHH context |
899804 |
| Methylated C's in Unknown context |
573 |
| Unmethylated C's in CpG context |
1226522 |
| Unmethylated C's in CHG context |
39982053 |
| Unmethylated C's in CHH context |
133620032 |
| Unmethylated C's in Unknown context |
7029 |
| Percentage methylation (CpG context) |
83.0% |
| Percentage methylation (CHG context) |
0.6% |
| Percentage methylation (CHH context) |
0.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2442984 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
2436918 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
4879902 |
| Unique alignments |
4685610 |
| Duplicates removed |
194292 |
| Duplicated alignments were found at 190357 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
141588495 |
| Methylated C's in CpG context |
4650379 |
| Methylated C's in CHG context |
202702 |
| Methylated C's in CHH context |
704669 |
| Unmethylated C's in CpG context |
948823 |
| Unmethylated C's in CHG context |
31033087 |
| Unmethylated C's in CHH context |
104048835 |
| Percentage methylation (CpG context) |
83.1% |
| Percentage methylation (CHG context) |
N/A% |
| Percentage methylation (CHH context) |
N/A% |
|
|
M-Bias Plot
