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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.9

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-11-30, 17:24 based on data in:


        General Statistics

        Showing 6/6 rows and 4/6 columns.
        Sample Name% mCpGM C's% Dups% Aligned
        SRR9833662.1.inputSRR9833662.1_R1_001
        83.1%
        141.6
        4.0%
        100.0%
        SRR9833663.inputSRR9833663_R1_001
        83.4%
        150.8
        3.7%
        100.0%
        SRR9833664.inputSRR9833664_R1_001
        82.9%
        156.4
        3.7%
        100.0%
        SRR9833670.1.inputSRR9833670.1_R1_001
        83.3%
        124.5
        3.8%
        100.0%
        SRR9833671.inputSRR9833671_R1_001
        82.3%
        138.5
        3.4%
        100.0%
        SRR9833672.inputSRR9833672_R1_001
        82.4%
        135.6
        3.5%
        100.0%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Deduplication

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        Strand Alignment

        All samples were run with --directional mode; alignments to complementary strands (CTOT, CTOB) were ignored.

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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