Metagenomics differential abundance analysis
Multidimensional Scaling (MDS) Plots
MDS plot by Breed and Feed.Efficiency
Differential abundance modelling in limma
Differential abundance analyses were conducted using limma-voom.
Compare abundance within each Breed and across Breed with each Feed.Efficiency
Analyses of abundance used the formula ~Breed + Feed.Efficiency in limma.
Output includes the columns:
- logFC: log2 fold change, with the group listed first in the comparison or file name being the numerator of the fold change
- AveExpr: Average expression across all samples
- P.Value: Raw p-value from the test that the log fold change differs from 0
- adj.P.Val: Benjamini-Hochberg false discovery rate adjusted p-value
| logFC | AveExpr | t | P.Value | adj.P.Val | B | |
|---|---|---|---|---|---|---|
| Cellulosilyticum sp. WCF-2 | 5.09591 | 4.94789 | 8.58129 | 0.00000 | 0.00000 | 14.91978 |
| Lactobacillus johnsonii | 4.00813 | 4.96636 | 7.08050 | 0.00000 | 0.00001 | 10.14329 |
| Desulfitobacterium metallireducens | 2.69173 | 2.38917 | 5.36389 | 0.00000 | 0.00195 | 4.66526 |
| Enterococcus faecalis | 3.48412 | 7.23520 | 4.99153 | 0.00001 | 0.00524 | 3.52307 |
| Clostridium fermenticellae | 3.20971 | 4.61490 | 4.69166 | 0.00002 | 0.00943 | 2.56288 |
| Clostridium taeniosporum | 3.12825 | 5.20173 | 4.68207 | 0.00002 | 0.00943 | 2.53937 |
| Brevibacillus choshinensis | 2.27830 | 2.15080 | 4.65053 | 0.00003 | 0.00943 | 2.46452 |
| Tsukamurella paurometabola | 2.45462 | 2.30774 | 4.46251 | 0.00005 | 0.01538 | 1.89849 |
| Cutibacterium avidum | 3.13119 | 3.21850 | 4.27190 | 0.00009 | 0.02547 | 1.33437 |
| Streptomyces chartreusis | 2.68424 | 2.37196 | 4.22291 | 0.00011 | 0.02685 | 1.19228 |
| Paenibacillus uliginis | 1.97342 | 2.09937 | 4.10635 | 0.00016 | 0.03142 | 0.85452 |
| Sphaerochaeta coccoides | 2.60299 | 3.26193 | 4.09390 | 0.00016 | 0.03142 | 0.82218 |
| Sedimentibacter sp. zth1 | 2.49920 | 5.61093 | 4.07486 | 0.00017 | 0.03142 | 0.76793 |
| Bacillus subtilis | 4.08999 | 3.88015 | 4.06879 | 0.00018 | 0.03142 | 0.73683 |
| Desulfosporosinus meridiei | 2.87515 | 3.41133 | 3.98937 | 0.00023 | 0.03522 | 0.52678 |
| Enterocloster clostridioformis | 0.34839 | 10.98071 | 3.97447 | 0.00024 | 0.03522 | -0.26249 |
| Sporosarcina ureae | 2.58435 | 2.70636 | 3.96562 | 0.00024 | 0.03522 | 0.45905 |
| Blautia hansenii | 0.64784 | 9.46411 | 3.95323 | 0.00025 | 0.03522 | 0.05470 |
| Sutcliffiella horikoshii | 2.52461 | 3.04577 | 3.90010 | 0.00030 | 0.03941 | 0.27752 |
| Roseburia hominis | 0.52650 | 11.58969 | 3.84401 | 0.00036 | 0.04427 | -0.85120 |
| Brevibacillus brevis | 3.17076 | 4.24447 | 3.83066 | 0.00037 | 0.04427 | 0.08727 |
| [Clostridium] scindens | 0.33211 | 10.95487 | 3.80441 | 0.00040 | 0.04460 | -0.76096 |
| Staphylococcus pseudoxylosus | 3.86042 | 4.84534 | 3.79884 | 0.00041 | 0.04460 | -0.01226 |
| Prochlorococcus marinus | 3.17095 | 5.20111 | 3.73671 | 0.00050 | 0.05176 | -0.17020 |
| Paenibacillus sp. FSL R7-0331 | 2.57075 | 5.33991 | 3.70892 | 0.00054 | 0.05313 | -0.24661 |
| Blautia sp. LZLJ-3 | 0.44633 | 9.37062 | 3.70209 | 0.00055 | 0.05313 | -0.66678 |
| Paenibacillus sp. FSL R7-0273 | 2.10421 | 6.01943 | 3.68182 | 0.00059 | 0.05341 | -0.33386 |
| Enterococcus cecorum | 2.96594 | 4.12326 | 3.67608 | 0.00060 | 0.05341 | -0.33779 |
| Gardnerella vaginalis | 2.65973 | 3.08688 | 3.65488 | 0.00064 | 0.05500 | -0.39390 |
| Pantoea dispersa | 2.20139 | 2.44789 | 3.62066 | 0.00071 | 0.05614 | -0.49616 |
| Bifidobacterium angulatum | 2.83966 | 5.33439 | 3.61820 | 0.00072 | 0.05614 | -0.48788 |
| Clostridium isatidis | 2.46812 | 5.88253 | 3.61565 | 0.00072 | 0.05614 | -0.50844 |
| Rossellomorea marisflavi | 2.56711 | 5.52201 | 3.57935 | 0.00080 | 0.06074 | -0.59308 |
| Syntrophotalea carbinolica | 2.15662 | 2.57308 | 3.54299 | 0.00090 | 0.06575 | -0.69684 |
| Anaerobutyricum hallii | 0.47736 | 10.90675 | 3.52201 | 0.00095 | 0.06778 | -1.56386 |
| Petrocella atlantisensis | 1.83864 | 6.36479 | 3.51142 | 0.00099 | 0.06778 | -0.79667 |
| Anaerostipes caccae | 0.37509 | 9.12840 | 3.50441 | 0.00101 | 0.06778 | -1.17720 |
| Clostridium argentinense | 1.82888 | 6.45104 | 3.49559 | 0.00103 | 0.06778 | -0.84462 |
| Fusobacterium mortiferum | 1.60327 | 1.85620 | 3.45903 | 0.00115 | 0.07361 | -0.94650 |
| Clostridium formicaceticum | 2.85312 | 3.77255 | 3.43115 | 0.00125 | 0.07649 | -0.98648 |
| Burkholderia cenocepacia | 2.03766 | 2.07433 | 3.42912 | 0.00126 | 0.07649 | -1.02321 |
| Pseudomonas entomophila | -1.27085 | 1.53482 | -3.41299 | 0.00132 | 0.07760 | -1.14143 |
| Niallia circulans | 2.69965 | 4.40856 | 3.40373 | 0.00136 | 0.07760 | -1.03821 |
| Sphaerochaeta globosa | 2.29657 | 4.94611 | 3.39035 | 0.00141 | 0.07760 | -1.07843 |
| Bacillus paralicheniformis | 2.07484 | 4.39465 | 3.38647 | 0.00143 | 0.07760 | -1.13236 |
| Anaerocolumna chitinilytica | 0.50754 | 8.67315 | 3.38508 | 0.00143 | 0.07760 | -1.42144 |
| Coprococcus catus | 0.42435 | 10.49161 | 3.37380 | 0.00148 | 0.07837 | -1.86016 |
| Bdellovibrio bacteriovorus | 2.39648 | 3.45686 | 3.36717 | 0.00151 | 0.07837 | -1.14284 |
| Caldanaerobacter subterraneus | 1.72057 | 2.32467 | 3.33648 | 0.00165 | 0.08306 | -1.25405 |
| Paenibacillus borealis | 2.43668 | 3.40161 | 3.33326 | 0.00167 | 0.08306 | -1.23182 |
| [Ruminococcus] torques | 0.45029 | 10.22678 | 3.30152 | 0.00183 | 0.08826 | -1.98545 |
| Paenibacillus beijingensis | 2.37863 | 3.39381 | 3.29879 | 0.00184 | 0.08826 | -1.30891 |
| Clostridium sp. SY8519 | 0.46524 | 12.08630 | 3.26738 | 0.00202 | 0.09482 | -2.68865 |
| Paenibacillus lycopersici | 1.45315 | 6.41878 | 3.24106 | 0.00217 | 0.10020 | -1.50836 |
| Lactobacillus crispatus | 1.91435 | 3.92146 | 3.23527 | 0.00221 | 0.10020 | -1.52190 |
| Sporolactobacillus terrae | 2.31113 | 3.34435 | 3.22572 | 0.00227 | 0.10037 | -1.49195 |
| Citrifermentans bremense | 2.55296 | 4.15222 | 3.21726 | 0.00233 | 0.10037 | -1.51396 |
| Lachnoclostridium phytofermentans | 0.57020 | 8.58529 | 3.21076 | 0.00237 | 0.10037 | -1.87111 |
| Longicatena caecimuris | 1.65007 | 6.95008 | 3.18072 | 0.00258 | 0.10037 | -1.72184 |
| Paenibacillus donghaensis | 2.07511 | 5.53904 | 3.17721 | 0.00261 | 0.10037 | -1.63535 |
| Parvimonas micra | 2.20737 | 6.60717 | 3.17554 | 0.00262 | 0.10037 | -1.69433 |
| Anaerostipes hadrus | 0.69575 | 10.14222 | 3.17301 | 0.00264 | 0.10037 | -2.31040 |
| Biomaibacter acetigenes | 1.85810 | 5.68080 | 3.16973 | 0.00266 | 0.10037 | -1.64545 |
| Baekduia soli | 1.88276 | 2.73506 | 3.14889 | 0.00283 | 0.10037 | -1.71281 |
| Bradyrhizobium diazoefficiens | 3.23974 | 5.31055 | 3.14604 | 0.00285 | 0.10037 | -1.72191 |
| Hathewaya histolytica | 2.18908 | 5.72694 | 3.12858 | 0.00299 | 0.10037 | -1.75102 |
| Ilumatobacter coccineus | -0.43213 | 0.97350 | -3.11366 | 0.00312 | 0.10037 | -2.29604 |
| Bifidobacterium catenulatum | 2.70932 | 5.04818 | 3.10908 | 0.00316 | 0.10037 | -1.79138 |
| Clostridium tyrobutyricum | 2.15864 | 5.25759 | 3.10378 | 0.00321 | 0.10037 | -1.79790 |
| Clostridium sp. DL-VIII | 2.66226 | 5.01878 | 3.08955 | 0.00334 | 0.10037 | -1.82584 |
| Caldalkalibacillus thermarum | 2.44529 | 3.17206 | 3.07832 | 0.00345 | 0.10037 | -1.88929 |
| Marinobacter fonticola | -0.43520 | 0.97684 | -3.07331 | 0.00350 | 0.10037 | -2.39740 |
| Actinobaculum sp. 313 | -0.43615 | 0.97788 | -3.06103 | 0.00362 | 0.10037 | -2.42809 |
| Flexistipes sinusarabici | -0.43615 | 0.97788 | -3.06103 | 0.00362 | 0.10037 | -2.42809 |
| Sphingomonas sp. YZ-8 | -0.43615 | 0.97788 | -3.06103 | 0.00362 | 0.10037 | -2.42809 |
| Serratia marcescens | 2.62904 | 7.00686 | 3.05768 | 0.00365 | 0.10037 | -2.02608 |
| Methylacidiphilum sp. IT6 | -0.43706 | 0.97888 | -3.04932 | 0.00374 | 0.10037 | -2.45727 |
| Roseobacter ponti | -0.43706 | 0.97888 | -3.04932 | 0.00374 | 0.10037 | -2.45727 |
| Hyphomicrobium sp. MC1 | -0.43706 | 0.97888 | -3.04932 | 0.00374 | 0.10037 | -2.45727 |
| Staphylococcus xylosus | 2.78215 | 3.28560 | 3.04787 | 0.00375 | 0.10037 | -1.95175 |
| Actinomyces sp. oral taxon 414 | 1.52459 | 1.76722 | 3.04622 | 0.00377 | 0.10037 | -2.01954 |
| Ichthyobacterium seriolicida | -0.44226 | 0.97350 | -3.03938 | 0.00384 | 0.10037 | -2.48747 |
| Veillonella rodentium | 1.61255 | 6.74803 | 3.03407 | 0.00390 | 0.10037 | -2.08267 |
| Listeria monocytogenes | 2.98154 | 3.85513 | 3.03263 | 0.00391 | 0.10037 | -1.96046 |
| Breznakiella homolactica | 1.82349 | 5.82963 | 3.03258 | 0.00391 | 0.10037 | -1.98851 |
| Usitatibacter palustris | -0.63471 | 1.09617 | -3.02835 | 0.00396 | 0.10037 | -2.38925 |
| Deinococcus gobiensis | -0.43879 | 0.98079 | -3.02742 | 0.00397 | 0.10037 | -2.51163 |
| Sulfurospirillum halorespirans | -0.43879 | 0.98079 | -3.02742 | 0.00397 | 0.10037 | -2.51163 |
| Skermania piniformis | -0.43879 | 0.98079 | -3.02742 | 0.00397 | 0.10037 | -2.51163 |
| Dissulfurispira thermophila | -0.43879 | 0.98079 | -3.02742 | 0.00397 | 0.10037 | -2.51163 |
| Xanthomonas albilineans | -0.43879 | 0.98079 | -3.02742 | 0.00397 | 0.10037 | -2.51163 |
| Algoriphagus sanaruensis | -0.44333 | 0.97465 | -3.02626 | 0.00398 | 0.10037 | -2.51991 |
| Deinococcus deserti | -0.43960 | 0.98170 | -3.01712 | 0.00409 | 0.10037 | -2.53711 |
| Thermoanaerobacterium sp. RBIITD | 2.03802 | 3.09966 | 3.01545 | 0.00410 | 0.10037 | -2.02025 |
| Paenibacillus cellulosilyticus | 2.11580 | 2.92012 | 3.01291 | 0.00413 | 0.10037 | -2.03280 |
| Nocardioides baekrokdamisoli | -0.44039 | 0.98258 | -3.00723 | 0.00420 | 0.10037 | -2.56151 |
| Pukyongia salina | -0.44527 | 0.97684 | -3.00172 | 0.00426 | 0.10037 | -2.58033 |
| Trichormus azollae | -0.70546 | 1.09283 | -2.99869 | 0.00430 | 0.10037 | -2.46699 |
| Helicobacter sp. NHP19-0012 | -0.44115 | 0.98344 | -2.99773 | 0.00431 | 0.10037 | -2.58489 |
| Ureibacillus thermosphaericus | 2.21439 | 4.97786 | 2.99672 | 0.00432 | 0.10037 | -2.12441 |
| Levilactobacillus koreensis | -0.64625 | 1.10425 | -2.99578 | 0.00433 | 0.10037 | -2.46574 |
| Veillonella parvula | 2.62558 | 3.48519 | 2.99308 | 0.00437 | 0.10037 | -2.07342 |
| Cyclobacterium amurskyense | -0.44441 | 0.97985 | -2.99138 | 0.00439 | 0.10037 | -2.60391 |
| Corynebacterium cystitidis | -0.53900 | 1.10191 | -2.98964 | 0.00441 | 0.10037 | -2.53216 |
| Amycolatopsis sp. DSM 110486 | 1.47342 | 1.98181 | 2.98322 | 0.00449 | 0.10037 | -2.15006 |
| Lachnoclostridium sp. YL32 | 0.32987 | 10.81698 | 2.98008 | 0.00452 | 0.10037 | -2.99882 |
| Myxococcus sp. SCHIC003 | -0.44261 | 0.98509 | -2.97979 | 0.00453 | 0.10037 | -2.62888 |
| Kordia antarctica | -0.44705 | 0.97888 | -2.97945 | 0.00453 | 0.10037 | -2.63485 |
| Geobacter pickeringii | 2.19824 | 4.37064 | 2.97423 | 0.00460 | 0.10037 | -2.09489 |
| Pseudooceanicola algae | -0.44333 | 0.98588 | -2.97127 | 0.00463 | 0.10037 | -2.64967 |
| Hymenobacter sp. DG25B | -2.30909 | 5.18920 | -2.96711 | 0.00469 | 0.10037 | -2.13554 |
| Lentzea guizhouensis | 1.64754 | 2.18488 | 2.96355 | 0.00473 | 0.10037 | -2.17199 |
| Calothrix sp. PCC 7716 | -0.44402 | 0.98665 | -2.96305 | 0.00474 | 0.10037 | -2.66969 |
| Undibacterium sp. KW1 | -0.44402 | 0.98665 | -2.96305 | 0.00474 | 0.10037 | -2.66969 |
| Psychrobacter sanguinis | -0.44668 | 0.98258 | -2.96227 | 0.00475 | 0.10037 | -2.67501 |
| Gramella salexigens | -0.44869 | 0.98079 | -2.95913 | 0.00479 | 0.10037 | -2.68437 |
| Tepidimonas taiwanensis | -0.44470 | 0.98740 | -2.95509 | 0.00484 | 0.10037 | -2.68901 |
| Sulfitobacter sp. JK7-1 | -0.44470 | 0.98740 | -2.95509 | 0.00484 | 0.10037 | -2.68901 |
| Lactobacillus iners | 2.71324 | 3.84306 | 2.95406 | 0.00486 | 0.10037 | -2.14722 |
| Corynebacterium gerontici | -0.44738 | 0.98344 | -2.95333 | 0.00487 | 0.10037 | -2.69675 |
| Owenweeksia hongkongensis | -0.44945 | 0.98170 | -2.94957 | 0.00492 | 0.10037 | -2.70759 |
| Pseudomonas multiresinivorans | -0.44535 | 0.98813 | -2.94735 | 0.00495 | 0.10037 | -2.70779 |
| Pandoraea norimbergensis | -0.65896 | 1.11485 | -2.94707 | 0.00495 | 0.10037 | -2.57964 |
| Methylomicrobium sp. wino1 | -0.44598 | 0.98885 | -2.93983 | 0.00505 | 0.10073 | -2.72597 |
| Aureimonas sp. SA4125 | -0.44598 | 0.98885 | -2.93983 | 0.00505 | 0.10073 | -2.72597 |
| Clostridium sp. AWRP | 1.74426 | 2.23545 | 2.92794 | 0.00522 | 0.10146 | -2.25281 |
| Frateuria aurantia | -0.44719 | 0.99023 | -2.92551 | 0.00525 | 0.10146 | -2.76053 |
| Arcobacter sp. FWKO B | -0.45003 | 0.98665 | -2.92069 | 0.00532 | 0.10146 | -2.77555 |
| Sphingomonas sp. AK-PDB1-5 | -0.44777 | 0.99090 | -2.91868 | 0.00535 | 0.10146 | -2.77698 |
| Atlantibacter hermannii | -0.67034 | 1.12359 | -2.91601 | 0.00539 | 0.10146 | -2.65076 |
| Flavobacterium sp. M31R6 | -0.45229 | 0.98509 | -2.91495 | 0.00540 | 0.10146 | -2.79117 |
| Herbinix luporum | 0.41444 | 9.22897 | 2.91404 | 0.00542 | 0.10146 | -2.75658 |
| Acetobacterium sp. KB-1 | 1.96245 | 4.56155 | 2.91382 | 0.00542 | 0.10146 | -2.26904 |
| Nonlabens sp. Ci31 | -0.45296 | 0.98588 | -2.90705 | 0.00552 | 0.10146 | -2.81008 |
| Streptococcus porcinus | -0.45130 | 0.98813 | -2.90577 | 0.00554 | 0.10146 | -2.81131 |
| Methanobrevibacter millerae | -0.93902 | 13.12587 | -2.89473 | 0.00571 | 0.10146 | -4.29663 |
| Aequorivita sp. H23M31 | -0.67660 | 1.12332 | -2.89346 | 0.00573 | 0.10146 | -2.70528 |
| Nocardia wallacei | -0.44998 | 0.99343 | -2.89326 | 0.00573 | 0.10146 | -2.83789 |
| Bacillus pumilus | 1.60221 | 7.26374 | 2.88983 | 0.00578 | 0.10146 | -2.46164 |
| Paeniglutamicibacter sp. Y32M11 | -0.45050 | 0.99403 | -2.88735 | 0.00582 | 0.10146 | -2.85198 |
| Flavobacterium psychrophilum | -0.45486 | 0.98813 | -2.88487 | 0.00586 | 0.10146 | -2.86298 |
| Anaerocolumna cellulosilytica | 0.49252 | 8.25753 | 2.88466 | 0.00587 | 0.10146 | -2.63903 |
| Limosilactobacillus pontis | -0.46665 | 0.97788 | -2.88267 | 0.00590 | 0.10146 | -2.87708 |
| Finegoldia magna | 1.42186 | 7.36582 | 2.88233 | 0.00590 | 0.10146 | -2.48314 |
| Pseudogulbenkiania sp. NH8B | -0.68114 | 1.13225 | -2.88059 | 0.00593 | 0.10146 | -2.73164 |
| Acidipropionibacterium virtanenii | -0.54681 | 1.13040 | -2.87901 | 0.00596 | 0.10146 | -2.79330 |
| Gluconobacter oxydans | -0.86606 | 1.29222 | -2.87732 | 0.00598 | 0.10146 | -2.62432 |
| Paenibacillus sp. BIHB4019 | 2.16071 | 3.67316 | 2.87151 | 0.00608 | 0.10236 | -2.36694 |
| Selenomonas sp. oral taxon 136 | 1.51915 | 7.69513 | 2.86492 | 0.00619 | 0.10288 | -2.57439 |
| Salegentibacter salegens | -0.45657 | 0.99023 | -2.86463 | 0.00619 | 0.10288 | -2.91101 |
| Nitrospirillum amazonense | 1.68579 | 3.67804 | 2.85826 | 0.00630 | 0.10363 | -2.42542 |
| Echinicola soli | -0.88274 | 1.13842 | -2.85502 | 0.00635 | 0.10363 | -2.78945 |
| Aeromonas simiae | 1.33522 | 1.70597 | 2.85106 | 0.00642 | 0.10363 | -2.49950 |
| Blautia argi | 0.37081 | 9.71152 | 2.84987 | 0.00644 | 0.10363 | -3.02408 |
| Marinobacter salarius | -0.45381 | 0.99793 | -2.84970 | 0.00644 | 0.10363 | -2.94132 |
| Agromyces sp. G127AT | -0.45424 | 0.99845 | -2.84482 | 0.00653 | 0.10364 | -2.95284 |
| Treponema sp. OMZ 838 | -0.45509 | 0.99946 | -2.83524 | 0.00670 | 0.10364 | -2.97537 |
| Azotobacter chroococcum | -0.45509 | 0.99946 | -2.83524 | 0.00670 | 0.10364 | -2.97537 |
| Gillisia sp. Hel1_33_143 | -0.45915 | 0.99343 | -2.83473 | 0.00671 | 0.10364 | -2.98143 |
| Sutterella faecalis | 2.10686 | 4.62966 | 2.83389 | 0.00672 | 0.10364 | -2.42202 |
| Luteimonas sp. MC1750 | -0.45550 | 0.99996 | -2.83061 | 0.00678 | 0.10364 | -2.98625 |
| Flavobacterium anhuiense | -0.45964 | 0.99403 | -2.82925 | 0.00681 | 0.10364 | -2.99429 |
| Cylindrospermum stagnale | -0.42560 | 0.97465 | -2.82886 | 0.00681 | 0.10364 | -3.01083 |
| Blautia obeum | 0.33388 | 11.67041 | 2.82798 | 0.00683 | 0.10364 | -3.66385 |
| Pantoea agglomerans | 2.37322 | 3.09487 | 2.82480 | 0.00689 | 0.10364 | -2.46075 |
| Agromyces aureus | -0.45629 | 1.00092 | -2.82163 | 0.00695 | 0.10364 | -3.00729 |
| Bacillus weihaiensis | -0.42002 | 0.98258 | -2.82074 | 0.00696 | 0.10364 | -3.02232 |
| Pseudomonas salegens | -0.48940 | 0.97577 | -2.81706 | 0.00703 | 0.10364 | -3.03940 |
| Simplicispira suum | -0.45959 | 0.99741 | -2.81579 | 0.00705 | 0.10364 | -3.02426 |
| Flavobacterium sp. CS20 | -0.46120 | 0.99577 | -2.81303 | 0.00711 | 0.10364 | -3.03227 |
| Phreatobacter sp. NMCR1094 | -0.46005 | 0.99793 | -2.81095 | 0.00715 | 0.10364 | -3.03559 |
| Burkholderia sp. DHOD12 | -0.45743 | 1.00231 | -2.80884 | 0.00719 | 0.10364 | -3.03715 |
| Sinorhizobium meliloti | 2.55065 | 3.21688 | 2.80852 | 0.00719 | 0.10364 | -2.48516 |
| Clostridium cellulovorans | 1.29222 | 6.95390 | 2.80350 | 0.00729 | 0.10443 | -2.61819 |
| Suicoccus acidiformans | -0.45816 | 1.00320 | -2.80074 | 0.00734 | 0.10450 | -3.05602 |
| Flavobacterium sp. 140616W15 | -0.46265 | 0.99741 | -2.79798 | 0.00740 | 0.10450 | -3.06733 |
| Paraburkholderia caribensis | -0.45851 | 1.00363 | -2.79680 | 0.00742 | 0.10450 | -3.06517 |
| Flavobacterium pallidum | -1.68744 | 2.20114 | -2.79449 | 0.00746 | 0.10455 | -2.57674 |
| Exiguobacterium alkaliphilum | -0.45921 | 1.00448 | -2.78908 | 0.00757 | 0.10477 | -3.08307 |
| Collimonas arenae | -0.56083 | 1.13980 | -2.78732 | 0.00761 | 0.10477 | -3.01038 |
| Fischerella sp. NIES-4106 | -2.03196 | 5.75253 | -2.78688 | 0.00762 | 0.10477 | -2.59795 |
| Azospirillum oryzae | -0.45954 | 1.00490 | -2.78530 | 0.00765 | 0.10477 | -3.09181 |
| Enterobacter cloacae | 3.25391 | 5.37115 | 2.77885 | 0.00778 | 0.10553 | -2.56973 |
| Arthrobacter woluwensis | -0.46020 | 1.00572 | -2.77796 | 0.00780 | 0.10553 | -3.10879 |
| Myroides phaeus | -0.46488 | 0.99996 | -2.77487 | 0.00786 | 0.10553 | -3.12085 |
| Pseudobutyrivibrio xylanivorans | 0.53501 | 11.46873 | 2.77366 | 0.00789 | 0.10553 | -3.73238 |
| Dysgonomonas sp. HDW5A | -0.72468 | 1.15817 | -2.77143 | 0.00793 | 0.10553 | -2.97603 |
| Burkholderia multivorans | -1.03514 | 1.35418 | -2.76752 | 0.00802 | 0.10553 | -2.84618 |
| Oceanihabitans sp. IOP_32 | -0.46115 | 1.00691 | -2.76740 | 0.00802 | 0.10553 | -3.13312 |
| Cellulophaga sp. HaHaR_3_176 | -0.46571 | 1.00092 | -2.76625 | 0.00804 | 0.10553 | -3.14072 |
| Cupriavidus oxalaticus | -0.42476 | 0.98813 | -2.76172 | 0.00814 | 0.10624 | -3.15881 |
| Flavobacterium sp. KK2020170 | -0.46652 | 1.00185 | -2.75799 | 0.00822 | 0.10643 | -3.15972 |
| Alkaliphilus metalliredigens | 1.86761 | 2.60215 | 2.75711 | 0.00824 | 0.10643 | -2.61272 |
| Microbacterium sp. 4R-513 | -0.46265 | 1.00879 | -2.75094 | 0.00837 | 0.10706 | -3.17090 |
| Burkholderia dolosa | -0.46265 | 1.00879 | -2.75094 | 0.00837 | 0.10706 | -3.17090 |
| Sphingomonas sp. AAP5 | -0.46293 | 1.00915 | -2.74780 | 0.00844 | 0.10739 | -3.17808 |
| Streptomyces sp. ZYC-3 | -0.46404 | 1.01055 | -2.73573 | 0.00871 | 0.10891 | -3.20564 |
| Desulfuromonas versatilis | 1.80552 | 5.15237 | 2.73426 | 0.00875 | 0.10891 | -2.67387 |
| Pseudonocardia sp. CGMCC 4.1532 | -0.46457 | 1.01123 | -2.72996 | 0.00885 | 0.10891 | -3.21877 |
| Nonlabens spongiae | -0.73582 | 1.16756 | -2.72911 | 0.00887 | 0.10891 | -3.06821 |
| logFC | AveExpr | t | P.Value | adj.P.Val | B | |
|---|---|---|---|---|---|---|
| Staphylococcus sp. 11-B-312 | 7.81553 | 4.11096 | 9.29439 | 0.00000 | 0.00000 | 17.32478 |
| Corynebacterium flavescens | -3.63936 | 2.13879 | -6.66401 | 0.00000 | 0.00003 | 8.79595 |
| Corynebacterium freneyi | 2.55085 | 6.71645 | 5.63100 | 0.00000 | 0.00077 | 5.49305 |
| Lactobacillus crispatus | -3.87064 | 3.92146 | -5.21989 | 0.00000 | 0.00240 | 4.17763 |
| Bacillus licheniformis | 6.49225 | 5.21920 | 5.14757 | 0.00000 | 0.00246 | 4.00119 |
| Conexibacter woesei | -3.82153 | 4.88710 | -4.82209 | 0.00001 | 0.00619 | 2.93022 |
| Prosthecochloris sp. GSB1 | -3.20168 | 3.03820 | -4.68684 | 0.00002 | 0.00836 | 2.56873 |
| Staphylococcus condimenti | 3.05188 | 5.95329 | 4.60431 | 0.00003 | 0.00962 | 2.27396 |
| Thermobispora bispora | -3.28226 | 2.73604 | -4.45361 | 0.00005 | 0.01408 | 1.86538 |
| Staphylococcus saprophyticus | 3.79718 | 5.78894 | 4.34861 | 0.00007 | 0.01608 | 1.53045 |
| Helcococcus kunzii | -3.54223 | 4.06632 | -4.34477 | 0.00007 | 0.01608 | 1.54921 |
| Rhodococcus rhodochrous | -4.29511 | 3.53603 | -4.32484 | 0.00008 | 0.01608 | 1.49078 |
| Limosilactobacillus vaginalis | -3.29656 | 2.32785 | -4.27048 | 0.00009 | 0.01771 | 1.32971 |
| Desulfosporosinus acidiphilus | -3.24645 | 3.00612 | -4.24553 | 0.00010 | 0.01783 | 1.25786 |
| Minicystis rosea | -3.36429 | 4.97906 | -4.20905 | 0.00011 | 0.01872 | 1.12926 |
| Streptomyces sp. NHF165 | -3.69896 | 3.53127 | -3.95134 | 0.00026 | 0.03986 | 0.41667 |
| Propionibacterium australiense | -3.05778 | 3.24053 | -3.83786 | 0.00036 | 0.05348 | 0.10433 |
| Clostridium gasigenes | -3.14154 | 5.77020 | -3.78082 | 0.00044 | 0.06026 | -0.04852 |
| Jeotgalibaca porci | -1.91380 | 1.57839 | -3.70426 | 0.00055 | 0.07222 | -0.26930 |
| Saccharomonospora viridis | 0.93174 | 9.85327 | 3.63478 | 0.00068 | 0.08477 | -1.79480 |
| Clostridium septicum | -3.32721 | 4.85979 | -3.59809 | 0.00076 | 0.09020 | -0.53925 |
| Methanosarcina mazei | 2.93487 | 2.07093 | 3.57082 | 0.00082 | 0.09347 | -0.61499 |
| Desulfovibrio sp. 86 | -3.19758 | 5.37299 | -3.55157 | 0.00087 | 0.09473 | -0.65683 |
| Desulfovibrio gigas | -2.72708 | 5.69121 | -3.53712 | 0.00091 | 0.09480 | -0.69278 |
| Acetobacterium sp. KB-1 | -2.83606 | 4.56155 | -3.52111 | 0.00096 | 0.09547 | -0.74325 |
| Thermomonospora curvata | -2.58025 | 2.66638 | -3.47502 | 0.00110 | 0.10127 | -0.87283 |
| Lactiplantibacillus plantarum | -2.16628 | 1.69345 | -3.47317 | 0.00110 | 0.10127 | -0.87917 |
| Methanobrevibacter millerae | 1.67617 | 13.12587 | 3.46320 | 0.00114 | 0.10127 | -2.51913 |
| Caldanaerobacter subterraneus | -2.20388 | 2.32467 | -3.44707 | 0.00119 | 0.10256 | -0.94333 |
| Nostoc sp. NIES-4103 | 2.09021 | 1.86367 | 3.37082 | 0.00149 | 0.12407 | -1.16607 |
| Homo sapiens | 0.72686 | 11.66051 | 3.35672 | 0.00156 | 0.12511 | -2.19908 |
| Dictyoglomus thermophilum | 1.35330 | 1.23663 | 3.31787 | 0.00174 | 0.13218 | -1.35531 |
| Methanosarcina barkeri | 1.30266 | 1.23096 | 3.31637 | 0.00175 | 0.13218 | -1.36234 |
| Lentilactobacillus buchneri | -1.65646 | 1.54072 | -3.28940 | 0.00189 | 0.13673 | -1.36229 |
| Moorella glycerini | -2.19054 | 5.93452 | -3.28065 | 0.00194 | 0.13673 | -1.35405 |
| Calothrix parasitica | 1.79477 | 7.82576 | 3.26792 | 0.00201 | 0.13673 | -1.52123 |
| Corynebacterium jeikeium | 2.84549 | 2.29683 | 3.26507 | 0.00203 | 0.13673 | -1.40739 |
| Fischerella sp. NIES-4106 | 3.27459 | 5.75253 | 3.25130 | 0.00211 | 0.13851 | -1.41709 |
| Denitrobacterium detoxificans | -0.45402 | 10.05854 | -3.21133 | 0.00237 | 0.15133 | -2.12449 |
| Pradoshia sp. D12 | -1.79291 | 1.75966 | -3.19592 | 0.00247 | 0.15353 | -1.59071 |
| Xanthomonas translucens | -4.32410 | 6.04694 | -3.18871 | 0.00252 | 0.15353 | -1.63026 |
| Butyrivibrio proteoclasticus | -0.60343 | 11.26410 | -3.16699 | 0.00269 | 0.15941 | -2.53324 |
| Ferribacterium limneticum | -1.69226 | 6.81993 | -3.14618 | 0.00285 | 0.16514 | -1.71853 |
| Peptoniphilus harei | -2.63243 | 5.86734 | -3.10362 | 0.00321 | 0.18193 | -1.78397 |
| Treponema caldarium | -2.04398 | 2.64416 | -3.08527 | 0.00338 | 0.18727 | -1.87607 |
| Lacipirellula parvula | 1.01326 | 1.22252 | 3.07020 | 0.00353 | 0.18803 | -2.01857 |
| Bacillus paralicheniformis | 2.32197 | 4.39465 | 3.06825 | 0.00354 | 0.18803 | -1.90692 |
| Flavobacterium alkalisoli | 1.03879 | 1.23496 | 3.05296 | 0.00370 | 0.19211 | -2.05436 |
| Chryseobacterium indologenes | 3.55407 | 5.31647 | 3.02849 | 0.00396 | 0.20142 | -1.96390 |
| Xanthomonas oryzae | 1.15532 | 1.28397 | 2.98912 | 0.00441 | 0.22004 | -2.18601 |
| Lancefieldella parvula | -1.47845 | 6.96450 | -2.93930 | 0.00506 | 0.22159 | -2.24618 |
| Granulicatella adiacens | 1.22433 | 1.29523 | 2.93019 | 0.00518 | 0.22159 | -2.32363 |
| Scytonema sp. NIES-4073 | 1.71831 | 1.74082 | 2.92411 | 0.00527 | 0.22159 | -2.29568 |
| Rhodocaloribacter litoris | -1.47060 | 6.78933 | -2.91917 | 0.00534 | 0.22159 | -2.26100 |
| Thermoanaerobacterium sp. RBIITD | -2.27605 | 3.09966 | -2.91402 | 0.00542 | 0.22159 | -2.25799 |
| Kutzneria albida | -2.25843 | 2.89062 | -2.90742 | 0.00552 | 0.22159 | -2.29024 |
| Allosaccharopolyspora coralli | -2.25143 | 2.60047 | -2.90026 | 0.00562 | 0.22159 | -2.29547 |
| Corynebacterium aurimucosum | 0.58295 | 6.56733 | 2.88954 | 0.00579 | 0.22159 | -2.80660 |
| Cereibacter sphaeroides | -2.85097 | 7.22898 | -2.85959 | 0.00627 | 0.22159 | -2.40116 |
| Methanofervidicoccus sp. A16 | 0.96102 | 1.10434 | 2.84761 | 0.00648 | 0.22159 | -2.62329 |
| Campylobacter lari | 1.25015 | 1.17797 | 2.83967 | 0.00662 | 0.22159 | -2.58369 |
| Bifidobacterium subtile | -2.63572 | 4.39389 | -2.82346 | 0.00691 | 0.22159 | -2.43035 |
| Aminomonas paucivorans | -2.51026 | 4.16765 | -2.80278 | 0.00730 | 0.22159 | -2.46899 |
| Neobacillus mesonae | 0.94478 | 1.11345 | 2.80183 | 0.00732 | 0.22159 | -2.72472 |
| Tessaracoccus timonensis | 1.77907 | 1.62563 | 2.79944 | 0.00737 | 0.22159 | -2.55489 |
| Clavibacter michiganensis | -2.93913 | 7.75226 | -2.78888 | 0.00758 | 0.22159 | -2.63173 |
| Vallitalea guaymasensis | -2.11794 | 6.08919 | -2.77703 | 0.00782 | 0.22159 | -2.57940 |
| Caloranaerobacter azorensis | -2.43587 | 4.03737 | -2.77505 | 0.00786 | 0.22159 | -2.54665 |
| Bos taurus | 0.58783 | 12.25561 | 2.76082 | 0.00816 | 0.22159 | -3.97586 |
| Luteithermobacter gelatinilyticus | 0.88011 | 1.10920 | 2.75601 | 0.00826 | 0.22159 | -2.83426 |
| Paludibacterium paludis | -1.23652 | 1.38932 | -2.75487 | 0.00829 | 0.22159 | -2.68375 |
| Caulifigura coniformis | -1.61722 | 1.73350 | -2.75003 | 0.00839 | 0.22159 | -2.68354 |
| Treponema brennaborense | -1.17715 | 7.22999 | -2.73760 | 0.00867 | 0.22159 | -2.72690 |
| Microbulbifer thermotolerans | 0.73715 | 1.09832 | 2.73726 | 0.00868 | 0.22159 | -2.94829 |
| Sphaerochaeta coccoides | -2.03739 | 3.26193 | -2.72855 | 0.00888 | 0.22159 | -2.68657 |
| Microbulbifer sp. GL-2 | 0.72849 | 1.10614 | 2.71259 | 0.00926 | 0.22159 | -2.99479 |
| Brasilonema sennae | 0.73259 | 1.10807 | 2.70701 | 0.00939 | 0.22159 | -3.00505 |
| Bifidobacterium eulemuris | -2.34515 | 3.78591 | -2.69730 | 0.00963 | 0.22159 | -2.73472 |
| Agarilytica rhodophyticola | 0.77894 | 1.11156 | 2.69577 | 0.00967 | 0.22159 | -3.02627 |
| Limosilactobacillus reuteri | -2.58331 | 5.52504 | -2.69468 | 0.00970 | 0.22159 | -2.74894 |
| Plesiomonas shigelloides | 0.74784 | 1.11193 | 2.69175 | 0.00977 | 0.22159 | -3.03505 |
| Paenibacillus lutimineralis | -1.66134 | 2.10699 | -2.68745 | 0.00988 | 0.22159 | -2.78483 |
| Oligella urethralis | 0.76542 | 1.11560 | 2.68185 | 0.01003 | 0.22159 | -3.05287 |
| Photobacterium profundum | 0.75801 | 1.11946 | 2.67132 | 0.01030 | 0.22159 | -3.07188 |
| Corynebacterium nuruki | 2.49671 | 2.78191 | 2.66965 | 0.01035 | 0.22159 | -2.74650 |
| Fusobacterium varium | 1.79982 | 2.02050 | 2.66649 | 0.01043 | 0.22159 | -2.82330 |
| Vallitalea pronyensis | -2.28816 | 5.12459 | -2.66448 | 0.01049 | 0.22159 | -2.78053 |
| Costertonia aggregata | -1.96118 | 2.20641 | -2.66266 | 0.01054 | 0.22159 | -2.85814 |
| Flavobacterium magnum | 2.65398 | 2.67400 | 2.65901 | 0.01064 | 0.22159 | -2.81178 |
| Mahella australiensis | -2.70398 | 4.66005 | -2.65160 | 0.01084 | 0.22159 | -2.81496 |
| Nocardia arthritidis | 0.78561 | 1.12815 | 2.64623 | 0.01099 | 0.22159 | -3.11769 |
| Leptotrichia trevisanii | 0.81700 | 1.13299 | 2.63683 | 0.01126 | 0.22159 | -3.13295 |
| Ornithinimicrobium sp. HY006 | 0.81747 | 1.14204 | 2.61271 | 0.01198 | 0.22159 | -3.17659 |
| Morganella morganii | -1.99734 | 7.22015 | -2.61267 | 0.01198 | 0.22159 | -2.99043 |
| Symbiobacterium thermophilum | -0.49567 | 7.80988 | -2.59647 | 0.01248 | 0.22159 | -3.16075 |
| Chryseobacterium camelliae | 2.74030 | 3.33579 | 2.59444 | 0.01255 | 0.22159 | -2.93856 |
| Bordetella avium | 0.86040 | 1.15264 | 2.59025 | 0.01268 | 0.22159 | -3.21500 |
| Cardiobacterium sp. Marseille-Q4385 | 1.22142 | 1.49522 | 2.58768 | 0.01277 | 0.22159 | -3.09912 |
| Limosilactobacillus fermentum | -2.29645 | 6.10582 | -2.58174 | 0.01296 | 0.22159 | -3.03368 |
| Methanobrevibacter smithii | 0.89663 | 11.51566 | 2.57907 | 0.01305 | 0.22159 | -4.13902 |
| Ruminococcus bicirculans | -0.58300 | 11.62077 | -2.57160 | 0.01330 | 0.22159 | -4.18723 |
| Bifidobacterium lemurum | -2.16658 | 5.83315 | -2.54694 | 0.01415 | 0.22159 | -3.03730 |
| Cupriavidus taiwanensis | -1.99185 | 7.13296 | -2.54593 | 0.01419 | 0.22159 | -3.11031 |
| Filifactor alocis | -2.08358 | 6.47110 | -2.54589 | 0.01419 | 0.22159 | -3.08057 |
| Pseudomonas fluorescens | 0.38474 | 9.34494 | 2.54101 | 0.01436 | 0.22159 | -3.58690 |
| Shewanella khirikhana | 0.94410 | 1.18299 | 2.53550 | 0.01456 | 0.22159 | -3.30626 |
| Ruminococcus champanellensis | -0.47145 | 11.87900 | -2.53499 | 0.01458 | 0.22159 | -4.34115 |
| Nostoc linckia | 1.28118 | 1.37322 | 2.53232 | 0.01468 | 0.22159 | -3.25153 |
| Acetivibrio thermocellus | -0.77455 | 8.06275 | -2.52424 | 0.01498 | 0.22159 | -3.38518 |
| Gordonia sp. YC-JH1 | 0.91782 | 1.18774 | 2.52403 | 0.01499 | 0.22159 | -3.32694 |
| Saccharibacillus brassicae | -0.36471 | 7.54755 | -2.50537 | 0.01570 | 0.22159 | -3.35043 |
| Clostridium sp. SY8519 | -0.40861 | 12.08630 | -2.50412 | 0.01575 | 0.22159 | -4.59631 |
| Anabaena sp. YBS01 | 3.47854 | 11.67686 | 2.50347 | 0.01578 | 0.22159 | -4.03064 |
| Mariniflexile sp. TRM1-10 | 0.48744 | 0.97577 | 2.49972 | 0.01592 | 0.22159 | -3.66536 |
| Enterococcus rotai | 0.53197 | 0.97229 | 2.49610 | 0.01607 | 0.22159 | -3.67715 |
| Streptococcus pantholopis | 0.53197 | 0.97229 | 2.49610 | 0.01607 | 0.22159 | -3.67715 |
| Hyphomonas sp. Mor2 | 0.48845 | 0.97684 | 2.49453 | 0.01613 | 0.22159 | -3.67561 |
| Streptomyces sp. TLI_053 | 0.95580 | 1.20415 | 2.49392 | 0.01616 | 0.22159 | -3.37752 |
| Faecalibacillus intestinalis | -1.44329 | 1.54870 | -2.49220 | 0.01622 | 0.22159 | -3.22963 |
| Ottowia sp. 27C | 0.47966 | 0.97985 | 2.49188 | 0.01624 | 0.22159 | -3.67824 |
| Vibrio europaeus | 0.52340 | 0.97350 | 2.49147 | 0.01625 | 0.22159 | -3.68605 |
| Mariprofundus ferrinatatus | 0.52340 | 0.97350 | 2.49147 | 0.01625 | 0.22159 | -3.68605 |
| Rubrobacter indicoceani | 0.52340 | 0.97350 | 2.49147 | 0.01625 | 0.22159 | -3.68605 |
| Nostoc carneum | 3.03413 | 7.91403 | 2.48988 | 0.01632 | 0.22159 | -3.29040 |
| Arthrobacter sp. NicSoilB8 | 0.97204 | 1.20953 | 2.48934 | 0.01634 | 0.22159 | -3.38279 |
| Desulfotalea psychrophila | 0.49029 | 0.97788 | 2.48875 | 0.01636 | 0.22159 | -3.68721 |
| Marinobacterium aestuarii | 0.52542 | 0.97465 | 2.48549 | 0.01650 | 0.22159 | -3.69797 |
| Hydrocarboniclastica marina | 0.52542 | 0.97465 | 2.48549 | 0.01650 | 0.22159 | -3.69797 |
| Streptococcus chenjunshii | 0.52542 | 0.97465 | 2.48549 | 0.01650 | 0.22159 | -3.69797 |
| Sarcina sp. JB2 | -2.45291 | 5.64165 | -2.48439 | 0.01654 | 0.22159 | -3.17615 |
| Nostoc sp. MS1 | 0.53624 | 0.97465 | 2.48406 | 0.01656 | 0.22159 | -3.70111 |
| Bombilactobacillus bombi | 0.49632 | 0.97788 | 2.48341 | 0.01658 | 0.22159 | -3.69896 |
| Thermomonas carbonis | 0.49632 | 0.97788 | 2.48341 | 0.01658 | 0.22159 | -3.69896 |
| Muricauda ruestringensis | 0.49203 | 0.97888 | 2.48314 | 0.01659 | 0.22159 | -3.69849 |
| Microbulbifer sp. ALW1 | 0.52732 | 0.97577 | 2.47954 | 0.01674 | 0.22159 | -3.70982 |
| Pseudomonas asturiensis | 0.52732 | 0.97577 | 2.47954 | 0.01674 | 0.22159 | -3.70982 |
| Paenibacillus sp. FSL R7-0273 | -1.76715 | 6.01943 | -2.47786 | 0.01681 | 0.22159 | -3.22327 |
| Vagococcus carniphilus | 1.19055 | 1.39511 | 2.47747 | 0.01683 | 0.22159 | -3.52098 |
| Fluviibacter phosphoraccumulans | 0.49461 | 0.97985 | 2.47689 | 0.01685 | 0.22159 | -3.71122 |
| Cytobacillus kochii | 0.48414 | 0.98258 | 2.47607 | 0.01689 | 0.22159 | -3.71002 |
| Scardovia inopinata | 0.52911 | 0.97684 | 2.47371 | 0.01699 | 0.22159 | -3.72142 |
| CrAssphage sp. | 0.54001 | 0.97684 | 2.47244 | 0.01704 | 0.22159 | -3.72420 |
| Pseudomonas alkylphenolica | 0.53083 | 0.97788 | 2.46814 | 0.01722 | 0.22159 | -3.73247 |
| Ferrimonas balearica | 0.53083 | 0.97788 | 2.46814 | 0.01722 | 0.22159 | -3.73247 |
| Lentilactobacillus parabuchneri | 0.50139 | 0.98079 | 2.46740 | 0.01725 | 0.22159 | -3.73106 |
| Shewanella yunxiaonensis | 0.50139 | 0.98079 | 2.46740 | 0.01725 | 0.22159 | -3.73106 |
| Zophobihabitans entericus | 0.50139 | 0.98079 | 2.46740 | 0.01725 | 0.22159 | -3.73106 |
| Oceanicoccus sagamiensis | 0.54177 | 0.97788 | 2.46695 | 0.01727 | 0.22159 | -3.73509 |
| Dyella sp. M7H15-1 | 0.49836 | 0.98258 | 2.46243 | 0.01746 | 0.22159 | -3.73988 |
| Spartinivicinus ruber | 0.49930 | 0.98258 | 2.46164 | 0.01750 | 0.22159 | -3.74161 |
| Staphylococcus felis | 0.54341 | 0.97888 | 2.46158 | 0.01750 | 0.22159 | -3.74575 |
| Mycoplasma sp. Mirounga ES2806-NAS | 0.54341 | 0.97888 | 2.46158 | 0.01750 | 0.22159 | -3.74575 |
| Bacillus aquiflavi | 1.35535 | 1.51025 | 2.46105 | 0.01752 | 0.22159 | -3.32249 |
| Aromatoleum aromaticum | 0.48857 | 0.98509 | 2.46080 | 0.01754 | 0.22159 | -3.74019 |
| Pseudomonas coronafaciens | 0.57723 | 0.98079 | 2.45333 | 0.01786 | 0.22159 | -3.76178 |
| Enterococcus cecorum | -2.26855 | 4.12326 | -2.45282 | 0.01788 | 0.22159 | -3.29192 |
| Kushneria marisflavi | 0.50607 | 0.98344 | 2.45253 | 0.01790 | 0.22159 | -3.76038 |
| Alkalihalobacillus halodurans | 0.50128 | 0.98428 | 2.45240 | 0.01790 | 0.22159 | -3.75957 |
| Chloroflexus aggregans | 0.53539 | 0.98079 | 2.45239 | 0.01790 | 0.22159 | -3.76383 |
| Luteibacter pinisoli | 0.50223 | 0.98428 | 2.45163 | 0.01794 | 0.22159 | -3.76124 |
| Salinibacterium hongtaonis | 0.49137 | 0.98665 | 2.45141 | 0.01795 | 0.22159 | -3.75864 |
| Gilliamella apicola | 0.54644 | 0.98079 | 2.45137 | 0.01795 | 0.22159 | -3.76605 |
| Desulfuromonas sp. AOP6 | -2.37594 | 4.28642 | -2.45022 | 0.01800 | 0.22159 | -3.22265 |
| Methanobrevibacter arboriphilus | 1.07626 | 9.07037 | 2.45000 | 0.01801 | 0.22159 | -3.75235 |
| Shewanella pealeana | 0.50752 | 0.98428 | 2.44759 | 0.01812 | 0.22159 | -3.77005 |
| Maribius sp. THAF1 | 0.50752 | 0.98428 | 2.44759 | 0.01812 | 0.22159 | -3.77005 |
| Thauera hydrothermalis | 0.50266 | 0.98509 | 2.44756 | 0.01812 | 0.22159 | -3.76906 |
| Sphingosinicella sp. BN140058 | 0.50266 | 0.98509 | 2.44756 | 0.01812 | 0.22159 | -3.76906 |
| Oleiphilus messinensis | 0.53679 | 0.98170 | 2.44754 | 0.01812 | 0.22159 | -3.77347 |
| Tomitella sp. HY188 | 0.49272 | 0.98740 | 2.44696 | 0.01814 | 0.22159 | -3.76736 |
| Gramella fulva | 0.50361 | 0.98509 | 2.44680 | 0.01815 | 0.22159 | -3.77071 |
| Methanococcoides methylutens | 0.54786 | 0.98170 | 2.44656 | 0.01816 | 0.22159 | -3.77558 |
| Yersinia aldovae | 0.50893 | 0.98509 | 2.44281 | 0.01833 | 0.22159 | -3.77936 |
| Paenibacillus baekrokdamisoli | 0.54934 | 0.98258 | 2.44176 | 0.01838 | 0.22159 | -3.78489 |
| Dongshaea marina | 0.53961 | 0.98344 | 2.43786 | 0.01855 | 0.22159 | -3.79225 |
| Acidovorax monticola | 0.50626 | 0.98665 | 2.43762 | 0.01856 | 0.22159 | -3.78859 |
| Enterobacter sp. RHBSTW-00994 | 0.50626 | 0.98665 | 2.43762 | 0.01856 | 0.22159 | -3.78859 |
| Devriesea agamarum | 0.50626 | 0.98665 | 2.43762 | 0.01856 | 0.22159 | -3.78859 |
| Thermobifida fusca | -0.93014 | 9.31599 | -2.43587 | 0.01864 | 0.22159 | -4.21802 |
| Herbaspirillum huttiense | 0.50657 | 0.98740 | 2.43400 | 0.01873 | 0.22159 | -3.79547 |
| Rhodanobacter glycinis | 0.50657 | 0.98740 | 2.43400 | 0.01873 | 0.22159 | -3.79547 |
| Brachyspira murdochii | 0.57224 | 0.98428 | 2.43321 | 0.01877 | 0.22159 | -3.80123 |
| Nissabacter sp. SGAir0207 | 0.54091 | 0.98428 | 2.43304 | 0.01877 | 0.22159 | -3.80161 |
| Roseburia hominis | -0.38420 | 11.58969 | -2.43157 | 0.01884 | 0.22159 | -4.55634 |
| Ruminococcus albus | -1.14854 | 13.88548 | -2.43020 | 0.01890 | 0.22159 | -5.58263 |
| Mannheimia granulomatis | 0.50780 | 0.98813 | 2.42977 | 0.01892 | 0.22159 | -3.80366 |
| Bergeyella cardium | 0.50780 | 0.98813 | 2.42977 | 0.01892 | 0.22159 | -3.80366 |
| Halomonas elongata | 0.51291 | 0.98740 | 2.42945 | 0.01894 | 0.22159 | -3.80530 |
| Yersinia aleksiciae | 0.51291 | 0.98740 | 2.42945 | 0.01894 | 0.22159 | -3.80530 |
| Bacillus pseudomycoides | 0.57359 | 0.98509 | 2.42871 | 0.01897 | 0.22159 | -3.80992 |
| Psychrobacter sp. YP14 | 0.50998 | 0.98885 | 2.42497 | 0.01915 | 0.22159 | -3.81311 |
| Corynebacterium endometrii | 0.54339 | 0.98588 | 2.42387 | 0.01920 | 0.22159 | -3.81933 |
| Maribacter sp. MJ134 | 0.51018 | 0.98955 | 2.42172 | 0.01930 | 0.22159 | -3.81923 |
| Myroides odoratus | 0.51660 | 0.98955 | 2.41735 | 0.01951 | 0.22159 | -3.82863 |
| Haemophilus influenzae | 0.51660 | 0.98955 | 2.41735 | 0.01951 | 0.22159 | -3.82863 |
| Mycetocola zhujimingii | 0.51660 | 0.98955 | 2.41735 | 0.01951 | 0.22159 | -3.82863 |
| Pseudopuniceibacterium antarcticum | 0.51244 | 0.99090 | 2.41415 | 0.01966 | 0.22159 | -3.83381 |
| Nostoc flagelliforme | 0.51343 | 0.99090 | 2.41346 | 0.01969 | 0.22159 | -3.83528 |
| Ralstonia insidiosa | 0.50349 | 0.99343 | 2.41248 | 0.01974 | 0.22159 | -3.83420 |
| Staphylococcus chromogenes | 0.57856 | 0.98813 | 2.41213 | 0.01976 | 0.22159 | -3.84168 |
| logFC | AveExpr | t | P.Value | adj.P.Val | B | |
|---|---|---|---|---|---|---|
| Corynebacterium aurimucosum | -8.38042 | 6.56733 | -42.38812 | 0.00000 | 0.00000 | 76.83000 |
| Corynebacterium freneyi | -7.61842 | 6.71645 | -14.35730 | 0.00000 | 0.00000 | 32.83230 |
| Corynebacterium stationis | -7.11243 | 6.49583 | -12.57555 | 0.00000 | 0.00000 | 27.83064 |
| Caldibacillus thermoamylovorans | -6.18923 | 5.64777 | -10.73774 | 0.00000 | 0.00000 | 22.35806 |
| Novibacillus thermophilus | -5.09420 | 5.65586 | -9.41509 | 0.00000 | 0.00000 | 18.05385 |
| Staphylococcus condimenti | -6.08798 | 5.95329 | -8.59991 | 0.00000 | 0.00000 | 15.54532 |
| Lactobacillus crispatus | -4.94941 | 3.92146 | -7.79107 | 0.00000 | 0.00000 | 12.83223 |
| Burkholderia gladioli | 5.71050 | 3.89378 | 7.17994 | 0.00000 | 0.00000 | 10.76449 |
| Corynebacterium flavescens | -3.86368 | 2.13879 | -7.10257 | 0.00000 | 0.00000 | 10.50696 |
| Corynebacterium xerosis | -4.86838 | 8.13817 | -6.62196 | 0.00000 | 0.00001 | 8.88008 |
| Thermoactinomyces vulgaris | -4.79925 | 9.86313 | -6.25978 | 0.00000 | 0.00002 | 7.57528 |
| Asticcacaulis excentricus | 3.22643 | 1.92943 | 6.20293 | 0.00000 | 0.00002 | 7.47287 |
| Ureibacillus thermosphaericus | -5.10936 | 4.97786 | -6.19988 | 0.00000 | 0.00002 | 7.44375 |
| Lactobacillus delbrueckii | -1.54113 | 10.14264 | -6.00052 | 0.00000 | 0.00005 | 6.31644 |
| Butyrivibrio hungatei | 1.78296 | 11.37777 | 5.61737 | 0.00000 | 0.00016 | 4.47555 |
| Limosilactobacillus vaginalis | -3.97003 | 2.32785 | -5.59773 | 0.00000 | 0.00016 | 5.43279 |
| Alkalihalobacillus clausii | -4.91678 | 7.34944 | -5.40539 | 0.00000 | 0.00028 | 4.81803 |
| Xanthomonas campestris | 3.76964 | 2.33595 | 5.40458 | 0.00000 | 0.00028 | 4.81384 |
| Aeribacillus pallidus | -3.90238 | 3.26262 | -5.28800 | 0.00000 | 0.00040 | 4.42967 |
| Mycolicibacterium thermoresistibile | -5.04513 | 4.35587 | -5.24518 | 0.00000 | 0.00044 | 4.24106 |
| Thermobifida fusca | -3.91357 | 9.31599 | -5.22619 | 0.00000 | 0.00045 | 4.02488 |
| Lactobacillus johnsonii | -3.22587 | 4.96636 | -5.15333 | 0.00000 | 0.00055 | 3.94482 |
| Saccharomonospora viridis | -6.37040 | 9.85327 | -5.11047 | 0.00001 | 0.00061 | 3.77740 |
| Brevilactibacter sp. MC1595 | 3.67863 | 2.54559 | 4.90416 | 0.00001 | 0.00117 | 3.19621 |
| Streptomyces bingchenggensis | 4.64079 | 3.05658 | 4.86121 | 0.00001 | 0.00130 | 3.05199 |
| Syntrophobacter fumaroxidans | 3.26022 | 2.30199 | 4.84807 | 0.00001 | 0.00131 | 3.01286 |
| Desulfolutivibrio sulfoxidireducens | 3.72736 | 3.73394 | 4.76070 | 0.00002 | 0.00169 | 2.75633 |
| Leptolyngbya sp. 15MV | 2.38589 | 1.66202 | 4.70743 | 0.00002 | 0.00195 | 2.55358 |
| Enterocloster clostridioformis | -0.49060 | 10.98071 | -4.67960 | 0.00002 | 0.00207 | 1.56666 |
| Corynebacterium striatum | -4.10455 | 4.49323 | -4.65669 | 0.00003 | 0.00216 | 2.36545 |
| Limosilactobacillus mucosae | -3.63448 | 10.52443 | -4.62843 | 0.00003 | 0.00229 | 1.77077 |
| Desulfonema limicola | 2.95819 | 2.09220 | 4.57915 | 0.00003 | 0.00262 | 2.14943 |
| Modestobacter marinus | 2.41490 | 1.69911 | 4.50463 | 0.00004 | 0.00325 | 1.92499 |
| Phycisphaera mikurensis | 2.94972 | 2.34432 | 4.46192 | 0.00005 | 0.00357 | 1.80292 |
| Variovorax paradoxus | 4.27972 | 4.36740 | 4.45412 | 0.00005 | 0.00357 | 1.80373 |
| Staphylococcus saprophyticus | -4.48612 | 5.78894 | -4.44944 | 0.00005 | 0.00357 | 1.69271 |
| Akkermansia muciniphila | 0.52269 | 8.86517 | 4.43696 | 0.00005 | 0.00362 | 1.31900 |
| Ligilactobacillus ruminis | -2.63866 | 9.71702 | -4.39060 | 0.00006 | 0.00410 | 1.08807 |
| Alistipes finegoldii | 0.76366 | 9.86750 | 4.35748 | 0.00007 | 0.00445 | 0.84472 |
| Blautia sp. LZLJ-3 | -0.61820 | 9.37062 | -4.24924 | 0.00010 | 0.00617 | 0.63004 |
| Ereboglobus luteus | 3.38303 | 4.32938 | 4.16778 | 0.00013 | 0.00766 | 0.95380 |
| Jeotgalibaca porci | -2.14401 | 1.57839 | -4.16686 | 0.00013 | 0.00766 | 0.86968 |
| Ureibacillus thermophilus | -3.32946 | 3.56391 | -4.11678 | 0.00015 | 0.00878 | 0.74422 |
| Anaerolinea thermophila | 3.72932 | 4.09527 | 4.10331 | 0.00016 | 0.00896 | 0.75988 |
| Actinoplanes sp. N902-109 | 3.19682 | 2.47315 | 4.08773 | 0.00017 | 0.00920 | 0.65884 |
| Desulfosediminicola ganghwensis | 1.79588 | 1.46121 | 4.08067 | 0.00017 | 0.00921 | 0.59031 |
| Clostridium sp. SY8519 | -0.68401 | 12.08630 | -4.07306 | 0.00017 | 0.00923 | -0.77272 |
| Nitrospirillum amazonense | 3.16250 | 3.67804 | 4.06375 | 0.00018 | 0.00931 | 0.63237 |
| Bacillus paralicheniformis | -3.09647 | 4.39465 | -4.04691 | 0.00019 | 0.00962 | 0.53434 |
| Hymenobacter sp. PAMC 26554 | 3.25734 | 5.54717 | 4.01579 | 0.00021 | 0.01018 | 0.47306 |
| Bifidobacterium pseudocatenulatum | 0.61217 | 10.20860 | 4.01576 | 0.00021 | 0.01018 | -0.32138 |
| Lactobacillus amylovorus | -4.48892 | 9.93894 | -4.01034 | 0.00021 | 0.01018 | 0.02649 |
| Treponema succinifaciens | 0.70249 | 9.29759 | 3.99282 | 0.00022 | 0.01043 | -0.17446 |
| Lactobacillus helveticus | -3.09523 | 2.37577 | -3.99081 | 0.00023 | 0.01043 | 0.35355 |
| Arthrobacter alpinus | 2.20584 | 1.62859 | 3.97563 | 0.00024 | 0.01074 | 0.31093 |
| Hymenobacter nivis | 3.32083 | 5.39992 | 3.95969 | 0.00025 | 0.01098 | 0.28746 |
| Fibrella sp. ES10-3-2-2 | 3.47716 | 3.65753 | 3.95726 | 0.00025 | 0.01098 | 0.34110 |
| Chelatococcus sp. CO-6 | -3.47968 | 2.58432 | -3.95093 | 0.00026 | 0.01101 | 0.24687 |
| Roseburia hominis | -0.63069 | 11.58969 | -3.93843 | 0.00027 | 0.01126 | -0.99744 |
| Lactiplantibacillus plantarum | -2.42542 | 1.69345 | -3.90443 | 0.00030 | 0.01231 | 0.11043 |
| Syntrophus aciditrophicus | 3.32366 | 2.87539 | 3.88331 | 0.00032 | 0.01294 | 0.06508 |
| Persicimonas caeni | 2.80541 | 5.01671 | 3.83127 | 0.00037 | 0.01497 | -0.04673 |
| Planctomyces sp. SH-PL62 | 3.69296 | 3.26336 | 3.81965 | 0.00039 | 0.01502 | -0.08044 |
| Rhodococcus rhodochrous | -4.28873 | 3.53603 | -3.81479 | 0.00039 | 0.01502 | -0.11528 |
| Lentilactobacillus buchneri | -1.91060 | 1.54072 | -3.81476 | 0.00039 | 0.01502 | -0.16760 |
| Kibdelosporangium phytohabitans | 3.24566 | 2.87098 | 3.78507 | 0.00043 | 0.01596 | -0.16778 |
| Desulfovibrio vulgaris | 2.68197 | 5.70851 | 3.78204 | 0.00043 | 0.01596 | -0.22151 |
| Pontibacillus sp. ALD_SL1 | -3.37728 | 3.38570 | -3.78068 | 0.00044 | 0.01596 | -0.24085 |
| Dialister hominis | -6.92980 | 7.91726 | -3.74216 | 0.00049 | 0.01771 | -0.46954 |
| Streptomyces sp. So13.3 | 2.53529 | 1.95644 | 3.70994 | 0.00054 | 0.01900 | -0.43676 |
| Fischerella sp. NIES-4106 | 3.54361 | 5.75253 | 3.70982 | 0.00054 | 0.01900 | -0.40536 |
| Veillonella rodentium | -2.48253 | 6.74803 | -3.70284 | 0.00055 | 0.01914 | -0.53463 |
| Caldanaerobacter subterraneus | -2.36658 | 2.32467 | -3.68989 | 0.00058 | 0.01957 | -0.49325 |
| Paenibacillus yonginensis | 3.49621 | 2.99325 | 3.68667 | 0.00058 | 0.01957 | -0.46301 |
| Pseudomonas putida | 0.55426 | 9.93932 | 3.68077 | 0.00059 | 0.01966 | -1.24590 |
| Dialister massiliensis | -5.40422 | 8.05104 | -3.66395 | 0.00062 | 0.02042 | -0.66520 |
| Xanthomonas translucens | -5.02679 | 6.04694 | -3.65529 | 0.00064 | 0.02051 | -0.63377 |
| Megasphaera stantonii | -0.52758 | 10.04725 | -3.65324 | 0.00064 | 0.02051 | -1.32763 |
| Pseudodesulfovibrio cashew | 2.65600 | 5.10920 | 3.64735 | 0.00065 | 0.02051 | -0.61488 |
| Desulfovibrio piger | 0.69774 | 8.56887 | 3.64552 | 0.00066 | 0.02051 | -1.03476 |
| Enterobacter hormaechei | 2.56643 | 1.71667 | 3.62509 | 0.00070 | 0.02155 | -0.70551 |
| Alistipes shahii | 0.63252 | 10.20869 | 3.61387 | 0.00072 | 0.02203 | -1.51803 |
| Megasphaera elsdenii | -2.88351 | 12.57958 | -3.59585 | 0.00076 | 0.02298 | -2.12416 |
| Atopobium sp. oral taxon 416 | -0.75814 | 9.62848 | -3.57274 | 0.00082 | 0.02434 | -1.45849 |
| Candidatus Desulfovibrio trichonymphae | 2.68887 | 2.68924 | 3.56056 | 0.00085 | 0.02466 | -0.76571 |
| Opitutus terrae | 3.19546 | 3.16130 | 3.56054 | 0.00085 | 0.02466 | -0.77710 |
| Helicobacter pylori | 3.50033 | 4.16252 | 3.55633 | 0.00086 | 0.02469 | -0.79460 |
| Acidaminococcus fermentans | -1.66614 | 11.42496 | -3.55020 | 0.00088 | 0.02486 | -2.00760 |
| Clostridium sp. 'deep sea' | 3.22786 | 3.35304 | 3.54491 | 0.00089 | 0.02498 | -0.82015 |
| Dialister pneumosintes | -4.17979 | 6.12115 | -3.54055 | 0.00090 | 0.02502 | -0.92013 |
| Pseudomonas oryzihabitans | 2.11826 | 1.77855 | 3.52461 | 0.00095 | 0.02596 | -0.96169 |
| Frigoriglobus tundricola | 2.90075 | 2.40944 | 3.52091 | 0.00096 | 0.02596 | -0.91121 |
| Coprococcus catus | -0.52901 | 10.49161 | -3.51511 | 0.00097 | 0.02613 | -1.86096 |
| Sphaerotilus natans | 1.59883 | 1.39839 | 3.49024 | 0.00105 | 0.02784 | -1.12904 |
| Kaustia mangrovi | 2.01649 | 1.78566 | 3.44582 | 0.00120 | 0.03142 | -1.18294 |
| Acholeplasma hippikon | 2.10287 | 1.77990 | 3.42744 | 0.00126 | 0.03215 | -1.22714 |
| Butyrivibrio fibrisolvens | 0.38344 | 13.25182 | 3.42602 | 0.00127 | 0.03215 | -3.23809 |
| Trueperella pyogenes | 0.48244 | 9.33581 | 3.42502 | 0.00127 | 0.03215 | -1.83201 |
| Nostoc carneum | 3.87279 | 7.91403 | 3.42415 | 0.00128 | 0.03215 | -1.38715 |
| Cupriavidus pauculus | 2.63597 | 5.53976 | 3.41374 | 0.00132 | 0.03282 | -1.27742 |
| Coprococcus comes | -0.48520 | 11.08054 | -3.39970 | 0.00137 | 0.03319 | -2.38258 |
| Treponema azotonutricium | 2.99484 | 4.82259 | 3.39808 | 0.00138 | 0.03319 | -1.22453 |
| Stieleria maiorica | 2.03000 | 1.80484 | 3.39706 | 0.00138 | 0.03319 | -1.31444 |
| Pradoshia sp. D12 | -1.92325 | 1.75966 | -3.39652 | 0.00138 | 0.03319 | -1.31688 |
| Riemerella anatipestifer | 2.08159 | 1.95076 | 3.36960 | 0.00150 | 0.03557 | -1.39905 |
| Lacunisphaera limnophila | 2.57759 | 5.95676 | 3.34836 | 0.00159 | 0.03719 | -1.44001 |
| Agrobacterium vitis | 2.57313 | 5.47786 | 3.34794 | 0.00160 | 0.03719 | -1.44611 |
| Alicycliphilus denitrificans | 2.52881 | 2.04155 | 3.34087 | 0.00163 | 0.03761 | -1.48882 |
| Acidaminococcus intestini | -1.56544 | 11.57142 | -3.32744 | 0.00169 | 0.03875 | -2.68628 |
| Paludibacterium paludis | -1.47873 | 1.38932 | -3.31738 | 0.00174 | 0.03954 | -1.59812 |
| Thermobispora bispora | -2.75557 | 2.73604 | -3.30886 | 0.00179 | 0.04006 | -1.47431 |
| Hymenobacter sedentarius | 2.41808 | 6.17518 | 3.30660 | 0.00180 | 0.04006 | -1.58460 |
| Alcaligenes faecalis | 3.10973 | 3.11137 | 3.29028 | 0.00189 | 0.04163 | -1.55193 |
| Geobacter sp. SVR | 2.57719 | 2.77593 | 3.28435 | 0.00192 | 0.04198 | -1.53231 |
| Oceanithermus profundus | 2.54106 | 2.05367 | 3.26841 | 0.00201 | 0.04357 | -1.63985 |
| Aminipila terrae | -0.45150 | 8.20674 | -3.25553 | 0.00209 | 0.04482 | -1.99589 |
| Calothrix brevissima | 3.04235 | 2.86847 | 3.22837 | 0.00225 | 0.04792 | -1.76085 |
| Desulfovibrio sulfodismutans | 2.82224 | 3.21929 | 3.22628 | 0.00227 | 0.04792 | -1.68510 |
| Weizmannia coagulans | -0.47432 | 7.91037 | -3.21778 | 0.00232 | 0.04853 | -2.06703 |
| Butyrivibrio virus Arawn | 1.44878 | 1.39714 | 3.21602 | 0.00234 | 0.04853 | -1.86367 |
| Candidatus Izimaplasma sp. HR1 | 2.17012 | 2.00951 | 3.20307 | 0.00242 | 0.04994 | -1.77818 |
| Dehalococcoides mccartyi | -0.92931 | 9.68614 | -3.19171 | 0.00250 | 0.05116 | -2.52390 |
| Nonomuraea coxensis | 2.61101 | 2.28502 | 3.18816 | 0.00253 | 0.05126 | -1.85379 |
| Alistipes onderdonkii | 0.63939 | 9.89098 | 3.16865 | 0.00267 | 0.05374 | -2.64496 |
| Bifidobacterium thermophilum | -2.64089 | 8.15337 | -3.15444 | 0.00278 | 0.05550 | -2.21301 |
| Mucilaginibacter ginsenosidivorax | 2.37824 | 2.43932 | 3.14763 | 0.00284 | 0.05613 | -1.95585 |
| Moorea producens | 2.21060 | 6.37892 | 3.12463 | 0.00303 | 0.05921 | -2.05315 |
| Roseomonas sp. 1318 | 2.30779 | 2.29450 | 3.12307 | 0.00304 | 0.05921 | -2.01433 |
| Mucilaginibacter mali | 2.37757 | 5.70340 | 3.11607 | 0.00310 | 0.05992 | -2.04012 |
| Rhodobacter capsulatus | 2.19363 | 1.84970 | 3.11242 | 0.00313 | 0.06007 | -2.03512 |
| Pelolinea submarina | 3.04959 | 3.65403 | 3.10772 | 0.00317 | 0.06041 | -1.97032 |
| Humisphaera borealis | 2.31192 | 5.31318 | 3.09523 | 0.00329 | 0.06190 | -2.08019 |
| Streptosporangium sp. 'caverna' | 2.69003 | 2.39133 | 3.09283 | 0.00331 | 0.06190 | -2.03652 |
| Nonomuraea sp. ATCC 55076 | 2.77188 | 2.54579 | 3.08871 | 0.00335 | 0.06190 | -2.07773 |
| Streptosporangium roseum | 2.75652 | 2.64213 | 3.08827 | 0.00335 | 0.06190 | -2.06657 |
| Faecalibacterium prausnitzii | 0.34613 | 13.73920 | 3.07457 | 0.00348 | 0.06384 | -4.48937 |
| Staphylococcus simiae | 1.98482 | 1.91048 | 3.06773 | 0.00355 | 0.06460 | -2.17539 |
| Dehalobacter restrictus | 2.90126 | 5.22270 | 3.06183 | 0.00361 | 0.06519 | -2.17605 |
| Aneurinibacillus soli | -3.17793 | 4.46505 | -3.02956 | 0.00395 | 0.07079 | -2.18617 |
| Desulfoglaeba alkanexedens | 1.82602 | 1.69910 | 3.01847 | 0.00407 | 0.07248 | -2.29185 |
| Tannerella forsythia | 0.62831 | 9.28689 | 3.00372 | 0.00424 | 0.07495 | -2.91408 |
| Mammaliicoccus vitulinus | 1.48915 | 1.47280 | 2.99739 | 0.00431 | 0.07570 | -2.40794 |
| Acholeplasma palmae | 2.53261 | 2.59943 | 2.99500 | 0.00434 | 0.07570 | -2.27687 |
| Bacillus subtilis | -3.54235 | 3.88015 | -2.99165 | 0.00438 | 0.07587 | -2.45352 |
| Haliangium ochraceum | 2.87973 | 3.78693 | 2.98629 | 0.00445 | 0.07647 | -2.26732 |
| Christensenella sp. Marseille-P3954 | 0.57142 | 10.64827 | 2.98229 | 0.00450 | 0.07678 | -3.38616 |
| Pyxidicoccus sp. SCPEA002 | 2.93479 | 3.54271 | 2.97806 | 0.00455 | 0.07709 | -2.28508 |
| Olsenella uli | -0.74325 | 10.80541 | -2.97404 | 0.00460 | 0.07709 | -3.42590 |
| Conexibacter sp. SYSU D00693 | 2.51073 | 2.21487 | 2.97343 | 0.00461 | 0.07709 | -2.40129 |
| Paenibacillus lutimineralis | -1.84118 | 2.10699 | -2.96816 | 0.00467 | 0.07725 | -2.42322 |
| Sorangium cellulosum | 0.36358 | 8.76769 | 2.96779 | 0.00468 | 0.07725 | -2.90769 |
| Corynebacterium humireducens | -1.97664 | 2.08667 | -2.96511 | 0.00471 | 0.07731 | -2.45907 |
| Faecalibacillus intestinalis | -1.70799 | 1.54870 | -2.95703 | 0.00482 | 0.07798 | -2.48575 |
| Luteitalea pratensis | 2.76122 | 3.56979 | 2.95508 | 0.00484 | 0.07798 | -2.35117 |
| Streptococcus equi | 2.61521 | 5.34164 | 2.95311 | 0.00487 | 0.07798 | -2.45490 |
| Micrococcus luteus | 3.73103 | 3.66412 | 2.95244 | 0.00488 | 0.07798 | -2.40749 |
| Bacteroides sp. M10 | 2.34894 | 7.17936 | 2.94642 | 0.00496 | 0.07877 | -2.75688 |
| Blautia obeum | -0.41171 | 11.67041 | -2.94231 | 0.00502 | 0.07895 | -3.80276 |
| Anaerostipes hadrus | -0.75324 | 10.14222 | -2.93882 | 0.00506 | 0.07895 | -3.33524 |
| Pusillimonas faecalis | 0.35306 | 10.97662 | 2.93863 | 0.00507 | 0.07895 | -3.58661 |
| Vogesella sp. LIG4 | 1.72207 | 1.81121 | 2.92979 | 0.00519 | 0.08031 | -2.55623 |
| Aquisphaera giovannonii | 2.15873 | 5.93497 | 2.92780 | 0.00522 | 0.08031 | -2.56196 |
| Pasteurella multocida | -2.46733 | 2.53498 | -2.91477 | 0.00541 | 0.08269 | -2.56980 |
| Desulfuromonas versatilis | 2.25481 | 5.15237 | 2.90745 | 0.00552 | 0.08336 | -2.54913 |
| Bulleidia sp. zg-1006 | -0.53267 | 8.18419 | -2.90553 | 0.00554 | 0.08336 | -2.90721 |
| Runella slithyformis | 2.47254 | 2.36088 | 2.90505 | 0.00555 | 0.08336 | -2.56781 |
| Rhizobacter gummiphilus | 1.17062 | 1.35703 | 2.90268 | 0.00559 | 0.08340 | -2.68634 |
| Massilia sp. CCM 8941 | 1.28666 | 1.29704 | 2.88314 | 0.00589 | 0.08680 | -2.76148 |
| Klebsiella pneumoniae | 3.86814 | 6.59068 | 2.88050 | 0.00593 | 0.08680 | -2.97111 |
| Komagataeibacter xylinus | 1.32323 | 1.31789 | 2.87998 | 0.00594 | 0.08680 | -2.75886 |
| Caldilinea aerophila | 2.07337 | 2.48782 | 2.87910 | 0.00595 | 0.08680 | -2.59858 |
| Hymenobacter sp. DG01 | 2.23513 | 6.05363 | 2.87465 | 0.00603 | 0.08734 | -2.74446 |
| Mycetocola sp. JXN-3 | 1.27084 | 1.30067 | 2.86911 | 0.00612 | 0.08764 | -2.79402 |
| Verrucomicrobium sp. GAS474 | 2.73372 | 3.18315 | 2.86906 | 0.00612 | 0.08764 | -2.54973 |
| Nonomuraea nitratireducens | 2.75821 | 2.52008 | 2.86572 | 0.00617 | 0.08793 | -2.65901 |
| Mycoplasma yeatsii | 1.29427 | 1.32036 | 2.86282 | 0.00622 | 0.08797 | -2.79958 |
| Bacillus smithii | -1.92424 | 1.80905 | -2.86134 | 0.00625 | 0.08797 | -2.71765 |
| Opitutus sp. GAS368 | 2.63964 | 4.35222 | 2.85923 | 0.00628 | 0.08797 | -2.60625 |
| Amycolatopsis sp. FDAARGOS 1241 | 1.69892 | 1.68709 | 2.85657 | 0.00633 | 0.08798 | -2.71744 |
| Mageeibacillus indolicus | 1.23211 | 9.25909 | 2.85395 | 0.00637 | 0.08798 | -3.29512 |
| Cellulosilyticum sp. WCF-2 | -1.92825 | 4.94789 | -2.85188 | 0.00641 | 0.08798 | -2.83395 |
| Desulfarculus baarsii | 2.68079 | 5.54514 | 2.85087 | 0.00642 | 0.08798 | -2.70172 |
| Salinibacterium sp. ZJ450 | 1.19895 | 1.28171 | 2.84501 | 0.00652 | 0.08841 | -2.86304 |
| Defluviicoccus vanus | -1.35741 | 1.32559 | -2.84497 | 0.00653 | 0.08841 | -2.83543 |
| Fibrobacter succinogenes | 2.53498 | 11.07897 | 2.83481 | 0.00671 | 0.09036 | -3.86556 |
| Actinoplanes friuliensis | 1.64117 | 1.67551 | 2.82532 | 0.00688 | 0.09198 | -2.79550 |
| Ruminococcus albus | -1.06312 | 13.88548 | -2.82320 | 0.00692 | 0.09198 | -5.35375 |
| Streptococcus sobrinus | 1.07159 | 1.22285 | 2.82211 | 0.00694 | 0.09198 | -2.95579 |
| Xanthobacter sp. YN2 | 2.76692 | 2.75914 | 2.81651 | 0.00704 | 0.09261 | -2.71085 |
| Rossellomorea vietnamensis | -1.12846 | 1.24674 | -2.81412 | 0.00709 | 0.09261 | -2.95450 |
| Pseudomonas fluorescens | 0.41357 | 9.34494 | 2.81361 | 0.00710 | 0.09261 | -3.39783 |
| Thiolapillus brandeum | 1.05264 | 1.22177 | 2.80811 | 0.00720 | 0.09348 | -2.99047 |
| Enterococcus mundtii | -1.08617 | 1.22790 | -2.80385 | 0.00728 | 0.09406 | -2.99172 |
| Bacteroides salyersiae | 0.62754 | 9.68711 | 2.79828 | 0.00739 | 0.09497 | -3.54481 |
| Labrys sp. KNU-23 | 2.62085 | 2.61494 | 2.79117 | 0.00753 | 0.09628 | -2.83939 |
| Nitrogeniibacter mangrovi | 1.05070 | 1.23396 | 2.78813 | 0.00759 | 0.09656 | -3.02966 |
| Clostridioides difficile | 0.76980 | 11.70332 | 2.78492 | 0.00766 | 0.09689 | -4.22198 |
| Anabaena sp. YBS01 | 3.71638 | 11.67686 | 2.78270 | 0.00770 | 0.09697 | -3.86196 |
| Bordetella bronchialis | 1.90920 | 2.01412 | 2.78018 | 0.00775 | 0.09712 | -2.90811 |
| Pseudopedobacter saltans | 1.15351 | 1.25786 | 2.77577 | 0.00784 | 0.09777 | -3.03669 |
R session information
## R version 4.0.1 (2020-06-06)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 16.04.6 LTS
##
## Matrix products: default
## BLAS/LAPACK: /usr/lib/libopenblasp-r0.2.18.so
##
## locale:
## [1] LC_CTYPE=en_US LC_NUMERIC=C LC_TIME=en_US
## [4] LC_COLLATE=en_US LC_MONETARY=en_US LC_MESSAGES=en_US
## [7] LC_PAPER=en_US LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] emmeans_1.4.8 kableExtra_1.2.1 knitr_1.29 readxl_1.3.1
## [5] rmarkdown_2.3 dplyr_1.0.0 ggplot2_3.3.5 edgeR_3.30.3
## [9] limma_3.44.3
##
## loaded via a namespace (and not attached):
## [1] zoo_1.8-8 tidyselect_1.1.0 locfit_1.5-9.4 xfun_0.16
## [5] purrr_0.3.4 splines_4.0.1 lattice_0.20-41 colorspace_1.4-1
## [9] vctrs_0.3.2 generics_0.0.2 htmltools_0.5.0 viridisLite_0.4.0
## [13] yaml_2.2.1 survival_3.2-3 rlang_0.4.11 pillar_1.4.6
## [17] glue_1.4.1 withr_2.2.0 multcomp_1.4-13 lifecycle_0.2.0
## [21] stringr_1.4.0 munsell_0.5.0 gtable_0.3.0 cellranger_1.1.0
## [25] rvest_0.3.6 mvtnorm_1.1-1 codetools_0.2-16 evaluate_0.14
## [29] labeling_0.3 highr_0.8 TH.data_1.0-10 Rcpp_1.0.5
## [33] xtable_1.8-4 scales_1.1.1 webshot_0.5.2 farver_2.0.3
## [37] digest_0.6.25 stringi_1.4.6 grid_4.0.1 tools_4.0.1
## [41] sandwich_2.5-1 magrittr_1.5 tibble_3.0.3 crayon_1.3.4
## [45] pkgconfig_2.0.3 MASS_7.3-51.6 ellipsis_0.3.1 Matrix_1.2-18
## [49] xml2_1.3.2 estimability_1.3 httr_1.4.2 rstudioapi_0.11
## [53] R6_2.4.1 compiler_4.0.1