Samples Input_reads Percent_rRNA Percent_LSU Percent_SSU Percent_5S Percent_5_8S Output_reads ANG_301 3151010 46.12 44.95 1.16 0.00 0.01 1697729 ANG_302 1685896 67.50 64.56 2.91 0.00 0.02 547934 ANG_303 3032952 63.84 61.87 1.95 0.00 0.02 1096750 ANG_304 2426853 24.27 23.06 1.15 0.04 0.02 1837973 ANG_305 3135180 57.65 55.66 1.97 0.00 0.01 1327740 ANG_307 2343525 51.11 48.25 2.84 0.00 0.00 1145844 ANG_308 2951883 51.94 45.13 6.79 0.01 0.00 1418804 ANG_401 2863540 70.51 67.92 2.55 0.00 0.03 844492 ANG_402 2185015 64.38 60.78 3.58 0.01 0.01 778403 ANG_403 1548160 52.46 48.43 4.02 0.00 0.00 736048 ANG_404 2761547 73.57 70.14 3.41 0.00 0.01 729854 ANG_407 2917821 75.41 73.01 2.38 0.00 0.02 717396 ANG_501 2257984 42.54 41.20 1.33 0.00 0.01 1297365 ANG_503 3333425 72.17 66.70 5.45 0.01 0.02 927575 ANG_505 1641224 21.25 20.26 0.98 0.01 0.00 1292409 ANG_506 2270110 49.78 46.20 3.56 0.00 0.00 1140084 CHAR_601 3716861 88.11 85.06 3.02 0.00 0.04 441797 CHAR_604 4586669 69.03 67.52 1.47 0.00 0.04 1420343 CHAR_608 4552422 80.94 79.39 1.51 0.00 0.04 867538 CHAR_611 2728944 40.43 40.01 0.38 0.00 0.04 1625526 CHAR_612 2647774 72.66 70.73 1.92 0.00 0.02 723770 CHAR_701 2934618 86.15 83.25 2.88 0.00 0.01 406499 CHAR_702 1465477 69.40 67.19 2.20 0.00 0.01 448424 CHAR_703 2417214 69.09 64.76 4.32 0.00 0.00 747235 CHAR_704 1366280 56.53 51.11 5.41 0.00 0.00 593961 CHAR_705 1611914 63.90 60.14 3.75 0.00 0.01 581967 CHAR_706 3815478 80.86 78.26 2.58 0.00 0.02 730096 CHAR_707 2978616 53.61 50.89 2.72 0.00 0.00 1381766 CHAR_708 2100735 51.41 49.29 2.11 0.00 0.00 1020694 CHAR_709 3031770 79.35 75.92 3.41 0.00 0.01 626145 CHAR_710 2411516 75.38 70.06 5.30 0.00 0.01 593802 CHAR_712 2723088 68.92 65.55 3.35 0.00 0.01 846399 HYB_101 2891731 18.05 17.41 0.62 0.00 0.01 2369872 HYB_103 2553586 11.65 10.81 0.82 0.01 0.02 2256025 HYB_104 2945599 44.93 44.09 0.76 0.01 0.06 1622109 HYB_105 3400600 79.68 77.16 2.46 0.00 0.05 691130 HYB_106 2934305 35.98 35.34 0.52 0.01 0.12 1878535 HYB_107 3276142 60.83 59.75 0.93 0.01 0.13 1283319 HYB_112 2094761 39.30 37.08 2.17 0.01 0.04 1271472 HYB_201 2002815 25.25 24.41 0.82 0.00 0.02 1497201 HYB_202 4133933 77.28 74.76 2.47 0.00 0.05 939129 HYB_203 2279558 56.51 54.91 1.58 0.00 0.01 991336 HYB_205 2425014 43.66 43.07 0.56 0.00 0.03 1366197 HYB_206 2547608 71.01 68.67 2.31 0.00 0.02 738472 HYB_207 4245671 57.45 56.59 0.81 0.00 0.05 1806501 HYB_208 3139654 69.17 67.74 1.38 0.00 0.04 967887 HYB_209 2942057 60.61 59.31 1.26 0.00 0.04 1158884 HYB_210 2918589 78.30 76.44 1.81 0.00 0.04 633458