Input data and parameters
Samples
| SL378589 | /share/workshop/gwas_workshop/jli/gwas_example/04-Qualimap/SL378589 |
| SL378588 | /share/workshop/gwas_workshop/jli/gwas_example/04-Qualimap/SL378588 |
| SL378587 | /share/workshop/gwas_workshop/jli/gwas_example/04-Qualimap/SL378587 |
Summary
Globals
| Number of samples | 3 |
| Total number of mapped reads | 99,413 |
| Mean samples coverage | 0.09 |
| Mean samples GC-content | 38.15 |
| Mean samples mapping quality | 0.65 |
| Mean samples insert size | 334 |
Sample statistics
| Sample name | Coverage mean | Coverage std | GC percentage | Mapping quality mean | Insert size median |
| SL378587 | 0.0862 | 1.6714 | 37.59 | 0.742 | 314.0 |
| SL378588 | 0.12 | 2.2371 | 38.45 | 0.5914 | 345.0 |
| SL378589 | 0.0782 | 1.4704 | 38.41 | 0.6167 | 343.0 |
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