{
    organism: "human"
    genome: ["GRCh38"]
    input_fasta: ["/path/to/GRCh38/assembly.fa"]
    input_gtf: ["/path/to/gencode/annotation.gtf"]
    non_nuclear_contigs: ["chrM"]
    input_motifs: "/path/to/jaspar/motifs.pfm"
}