Documentation
All documentation for the workshop is best viewed from the github.io pages. If you click the link below, and nothing happens, you are already looking at the documentation page.
Contact - UC Davis Bioinformatics Core, training.bioinformatics@ucdavis.edu
This one-day online workshop follows a 10x Genomics Visium spatial transcriptomics experiment from sequencing data to visualization. The primary packages used for analysis will be 10x software for sequence reads to counts, and the R package Seurat for downstream analysis. Course materials assume familiarity with single cell RNA-Seq experiments, the command line, and R.
Participants will need access to a computer with a reliable connection to the internet, a current versions of R version and Rstudio installed, and an application that allows them to ssh into a server.
Schedule
This workshop has already passed. Registrants will have access to a recording of a documentation walk-through on Zoom for 100 days.