Working on the Life Sciences Super Computing v0 cluster (LSSC0)

UC Davis Genome Center Bioinformatics Core

• Introduction to the Core

• Getting Connected

• Cluster intro - Matt Settles

• Genome Assembly Overview - Matt Settles

• Davis Genome Center - Lutz Froenicke

• KAT and Data QA/QC - Gonzalo Garcia

• Kat example commands

• Genome Scaffolding with HiC -Zev Kronenberg
• Juicebox - Zev Kronenberg

• Falcon Phase - Zev Kronenberg

• Sequencing Technologies - Ruta Sahasrabudhe

• Sequencing Technologies - Diana Burkart-Waco

• Pacific Biosciences Assembly - Joe Fass

• Oxford Nanopore Assembly - Jie Li

• 10X Assembly - Matt Settles

TBD

• More Assembly Integration - Jie Li, Joe Fass

Evaluation

Evaluation