2017/2018 Single Cell RNA Sequecing Analysis Workshop at UCD,UCB,UCSF

UC Davis December 18-20, 2017

UC Berkeley January 10-12, 2018

UC SF March 19-21, 2018

github link

Day 1

• Introduction
• Single Cell Technologies (Eric Chow, UCSF talk)
• Logging In and transferring files
• Intro to command-line
• Bioinformatics
• Lunch - Sponsored by Takara
• Takara Technology talk
• Working on a cluster
• Generating an expression matrix from 10x sc data

Day 2

• Intro to R
• Dataset Introduction
• Seurat Analysis - PART 1
  • The R markdown file - PART 1
• Lunch - Sponsored by 10X genomics
• 10X genomics Technology talk
• Seurat Analysis - PART 2
  • The R markdown file - PART 2
• Seurat Analysis - PART 3
  • The R markdown file - PART 3

Day 3

• Seurat Analysis - PART 4
  • The R markdown file - PART 4
• Experimental Design
• Lunch - Sponsored by Illumina
• Illumina Technology talk
• Seurat Analysis - PART 5
  • The R markdown file - PART 5
• Closing Thoughts

POST WORKSHOP ADDITION

• Seurat Analysis - PART 6
  • The R markdown file - PART 6

Evaluation!

Please help us improve future workshops, for you and others, by filling out an evaluation.