UC Davis Genome Center Bioinformatics Core

Introduction

Tuesday

• Introductions, and Getting Connected
• Unix & the Command Line - HANDS-ON
• Unix & the Command Line - Challenge Solutions - HANDS-ON
• Some Bioinformatics File Formats - TALK
• Installing Simple Bioinformatics Software - HANDS-ON

Wednesday

• Review and Q&A
• Warmup / Review - HANDS-ON
• Warmup - Solutions - HANDS-ON
• Advanced Command Line Topics - HANDS-ON
• Using Screen to Manage Multiple Projects - TALK
• Clusters & Modules - HANDS-ON
• A Simple RNA-Seq Workflow

Thursday

• Getting Started
• Introduction to R
• Data in R - Prepare
• Data in R

Friday

• Linear Models in R
• Walkthrough of Vignettes for limma and biomaRt

Cheat Sheets

Cheat Sheets

Possible extra lectures

• Introduction to Bioinformatics - TALK

Evaluations

Evaluation for Command-Line
Evaluation for R