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      Introduction to the Command Line for Bioinformatics

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Introduction
Introduction to the Workshop and the Core
Schedule
Support
Slack
Zoom
Cheat Sheets
Windows 10 and Mac installation
CLI
Introduction to the Command Line 1
Introduction to the Command Line 2
Introduction to the Command Line 3
Extra
Software Installation
Installation using make and cmake
Conda
ETC
Closing thoughts
Github page
Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each afternoon.

Tuesday, March 2

2:00 pm Zoom session starts
2:10 pm Logging in
2:30 pm What is the command line?
3:00 pm Command line basics
3:30 pm Break
3:45 pm Navigating using the command line
5:00 pm Zoom session ends

Friday, March 5

2:00 pm Zoom session starts
2:10 pm Creating and destroying files
2:45 pm Pipes and redirection
3:15 pm Break
3:30 pm Wildcards
4:15 pm Manipulating files
5:00 pm Zoom session ends

Tuesday, March 9

2:00 pm Zoom session starts
2:10 pm Symbolic links
2:40 pm Stdout & Stderr
3:00 pm Break
3:15 pm Simple shell scripts
5:00 pm Zoom session ends