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      Introduction to the Command Line for Bioinformatics

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Introduction to the Workshop and the Core
Schedule
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Introduction to the Command Line 1
Introduction to the Command Line 2
Introduction to the Command Line 3
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BashCrawl
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Software Installation
Installation using make and cmake
Conda
ETC
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Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each afternoon.

Monday, Sept 11

2:00 pm Zoom session starts
2:10 pm Logging in
2:30 pm What is the command line?
3:00 pm Command line basics
3:30 pm Break
3:45 pm Navigating using the command line
5:00 pm Zoom session ends

Wednesday, Sept 13

2:00 pm Zoom session starts
2:10 pm Creating and destroying files
2:45 pm Pipes and redirection
3:15 pm Break
3:30 pm Wildcards
4:15 pm Manipulating files
5:00 pm Zoom session ends

Friday, Sept 15

2:00 pm Zoom session starts
2:10 pm Symbolic links
2:40 pm Stdout & Stderr
3:00 pm Break
3:15 pm Simple shell scripts
5:00 pm Zoom session ends