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      Advanced Topics in Single Cell RNA-Seq: Spatial Transcriptomics

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Spatial Transcriptomics
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Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Thursday, December 15

8:50 am Zoom session starts
9:00 am Introductions
9:30 am What is spatial transcriptomics?
10:00 am Generating an expression matrix
11:30 am Guest speaker- 10x Genomics
12:00 am Lunch
1:00 pm QA / QC
2:00 pm Preliminary analysis
2:30 pm Batch effect correction
3:00 pm Cell type prediction and deconvolution
3:30 pm Visualizing clusters
4:00 pm Spatially variable features
5:00 pm Zoom session ends