Links to Scripts

SLURM script for Space Ranger

01-spaceranger.slurm

R markdown document for analysis portion of this workshop

spatial_analysis.Rmd

SLURM script for Seurat’s FindSpatiallyVariableFeatures function

02-Seurat.slurm

R script for Seurat’s FindSpatiallyVariableFeatures function

FindSpatiallyVariable.R