October 2017 ILRI Microbial Community Analysis Workshop

October 9-13, 2017

github link

Intro Material

• Intro to command line
• Intro to R

Cheat Sheets

• Unix
• R
• R-Studio

Lectures

• Intro to Microbial Sequencing (talk)
• What is Bioinformatics? (talk)
• dbcAmplicons: Amplicons (materials)
• dbcAmplicons: Bioinformatics (materials)

dataset metadata

• sample submission
• barcode table
• primer table
• sample sheet

Hands-on

• Installing Software
• dbcAmplicons: Data processing, 16S V1-V3
• dbcAmplicons: Data processing, other amplicons
• MCA Analysis in phyloseq

Resources

• Primer Design

Metagenomics Discussion

• Metagenomics
• Preprocessing Data

Closing thoughts