Schedule
All posted times are Pacific time zone. At least one break will be provided each morning and afternoon. This is a dual-format in-person and remote workshop. Zoom meeting will be open to remote participants from 8:50 am to 5:00 pm daily.
Monday, December 13
| 9:00 am | Using Zoom for the workshop |
| 9:15 am | Introduction to the workshop and the Core |
| 9:45 am | Basics of the Command Line |
| 10:30 am | Break |
| 10:45 am | Command Line, continued |
| 11:30 am | Sponsor talk / questions (TBA) |
| 12:00 pm | Lunch |
| 1:00 pm | Introduction to R for Bioinformatics |
| 3:00 pm | Break |
| 3:15 pm | R, continued |
| 4:30 pm | Project set-up |
Tuesday, December 14
| 9:00 am | Metagenomics (overview lecture) |
| 10:00 am | Break |
| 10:15 am | Adapter and quality trimming |
| 11:30 am | Sponsor talk / questions (TBA) |
| 12:00 pm | Lunch |
| 1:00 pm | Community profiling with Kraken |
| 3:00 pm | Break |
| 3:15 pm | Host DNA removal |
Wednesday, December 15
| 9:00 am | Community profiling using assembly |
| 10:00 am | Break |
| 10:15 am | Guest lecture |
| 11:30 am | Sponsor talk / questions (TBA) |
| 12:00 pm | Lunch |
| 1:00 pm | Community profiling using assembly, continued |
| 3:00 pm | Break |
| 3:15 pm | Metagenomics downstream analysis |
Thursday, December 16
| 9:00 am | Metatranscriptomics (overview lecture) |
| 10:00 am | Break |
| 10:15 am | Adapter and quality trimming, rRNA removal |
| 11:30 am | Sponsor talk / questions (TBA) |
| 12:00 pm | Lunch |
| 1:00 pm | Metatranscriptomics assembly |
| 3:00 pm | Break |
| 3:15 pm | Metatranscriptomics assembly, continued |
Friday, December 17
| 9:00 am | Functional annotation of the transcriptome |
| 10:00 am | Break |
| 10:15 am | Functional annotation of the transcriptome, continued |
| 11:30 am | Sponsor talk / questions (TBA) |
| 12:00 pm | Lunch |
| 1:00 pm | Integration of metagenomic and metatranscriptomic data |
| 3:00 pm | Break |
| 3:15 pm | Integration of metagenomic and metatranscriptomic data, continued |
| 4:00 pm | Closing |