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      RNA Seq Differential Expression and Enrichment Analysis

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Preliminaries
Before the course
File downloads
Data Analysis
Differential Expression
Enrichment Analysis
R Code for Quizzes
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Files to download

Cut and paste these lines of code into your RStudio console to download the necessary analysis files to your R working directory:

download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2022-April-GGI-DE-in-R/master/data_analysis/DE_Analysis.Rmd", file.path(getwd(), "DE_Analysis.Rmd"))
download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2022-April-GGI-DE-in-R/master/data_analysis/enrichment.Rmd", file.path(getwd(), "enrichment.Rmd"))
download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2022-April-GGI-DE-in-R/master/data_analysis/counts_for_course.txt", file.path(getwd(), "counts_for_course.txt"))
download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2022-April-GGI-DE-in-R/master/data_analysis/metadata_for_course.csv", file.path(getwd(), "metadata_for_course.csv"))
download.file("https://raw.githubusercontent.com/ucdavis-bioinformatics-training/2022-April-GGI-DE-in-R/master/data_analysis/annotation.txt", file.path(getwd(), "annotation.txt"))