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Single Cell RNA-Seq Analysis
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Introduction and Lectures
Intro to the Workshop and Core
Schedule
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
Support
Slack
Zoom
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
R
Data Reduction
Files and Filetypes
Project setup
Generating Expression Matrix
scRNAseq Analysis
Prepare scRNAseq Analysis
scRNAseq Analysis - PART1
scRNAseq Analysis - PART2
scRNAseq Analysis - PART3
scRNAseq Analysis - PART4
scRNAseq Analysis - PART5
scRNAseq Analysis - PART6
scRNAseq Analysis - PART7
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website
Links to Scripts
Slurm script for cellranger counts
Cellranger counts
Bash script (loop) for cellranger counts
Cellranger counts
