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      Single Cell RNA-Seq Analysis

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Introduction and Lectures
Intro to the Workshop and Core
Schedule
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
Support
Slack
Zoom
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
R
Data Reduction
Files and Filetypes
Project setup
Generating Expression Matrix
scRNAseq Analysis
Prepare scRNAseq Analysis
scRNAseq Analysis - PART1
scRNAseq Analysis - PART2
scRNAseq Analysis - PART3
scRNAseq Analysis - PART4
scRNAseq Analysis - PART5
scRNAseq Analysis - PART6
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, March 21

8:50 am Zoom session starts
9:00 am Introductions
9:30 am Intro 2 Command Line
11:30 am PerkinElmer Sponsor Talk
12:00 am Lunch
1:00 pm Using the Cluster
1:45 pm Project Setup
2:15 pm Creating an Expression Matrix
4:30 pm Zoom session ends

Tuesday, March 22

8:50 am Zoom session starts
9:00 am Intro 2 R
11:00 am Installing R Packages
11:30 am 10x Genomics Sponsor Talk
12:00 pm Lunch
1:00 pm Data setup
1:30 pm Data Analysis Parts 1 - 2
4:30 pm Zoom session ends

Wednesday, March 23

8:50 am Zoom session starts
9:00 am Data Analysis Parts 3 - 4
11:30 am Jumpcode Genomics Sponsor Talk
12:00 pm Lunch
1:00 pm Data Analysis Parts 5 - 6
4:30 pm Zoom session ends