All documentation for the workshop is best viewed from the github.io pages
Single Cell RNA-Seq Analysis
Dec. 11, 2023 - Dec. 13, 2023, 9 a.m. - 5:00 p.m daily.
Contact - UC Davis Bioinformatics Core, training.bioinformatics@ucdavis.edu
This three-day online workshop covers experimental design, data generation, and analysis of single cell RNA sequencing data. Participants will explore a single cell experiment using the command line and R, create and modify workflows, and diagnose and treat problematic data utilizing high performance computing services. The primary packages used for analysis will be 10x software for sequence reads to counts, and the R package Seurat for downstream analysis.
To get the most out of this course, please complete the prerequisite material in command line and R before the course, and contact us with any questions.
This workshop will be held online from 9:00 am to 5:00 pm each day.
Participants will need access to a computer with a reliable connection to the internet, a current versions of R version and Rstudio installed, and an application that allows them to ssh into a server (e.g. Bash for Windows, or Terminal for Apple).
FAQ
Who should attend? … Prior course participants have included faculty, post docs, grad students, staff, and industry researchers.
What are the prerequisites? … To get the most out of this course, please complete the prerequisite material in command line and R before the course, and contact us with any questions.
What do I need? … You will need access to a computer with a reliable connection to the internet, a current versions of R version and Rstudio installed, and an application that allows them to ssh into a server (e.g. Bash for Windows, or Terminal for Apple). If your department does not allow you to install software on your computer, please contact us ahead of time.
Can I bring my own data? … We will provide datasets for use during the workshop, as this helps to keep the workshop moving. There will be time, however, to discuss your own datasets and how you might work with them outside of the workshop.
How much does it cost? … The registration fee is $1,500 for current students, postdocs, staff and faculty at Univeristy of California campus’ or UC National Labs (LBNL, LANL, LLNL), $1,750 for other academic or non-profit participants and $3,000 for other participants. We accept credit cards, as well as UC Davis recharge accounts, for payment.
How do I apply? … All registration is “first-come, first-served”. There is no application process. So, sign up as soon as possible to ensure your place in the workshop.
Where can I find more information, including your policies? … Go to our website (bioinformatics.ucdavis.edu/training/) and check out our FAQ and Policies.
Questions
If you have any questions, please don’t hesitate to contact us at training.bioinformatics@ucdavis.edu
Register
Register for Single Cell RNA-Seq at the Genome Center Event Registration site.