Cheat Sheets
Monday
- Introduction
- Logging In and transferring files (hands-on)
- Intro to command-line (hands-on)
- Advanced command-line (hands-on)
- Running jobs on the Cluster and using modules (hands-on)
Tuesday
- Files and Filetypes for Genomes/Annotation (talk)
- Experimental Design and Cost Estimation (talk)
- Intro to the Research: Occipitoatlantoaxial Malformation
- Preprocessing Data hands-on
Wednesday
- Aligners (talk)
- Aligning Data and IGV (hands-on)
- Files and Filetypes for Genomes/Annotation - sam/bam (talk)
- Variant calling with Freebayes & Delly (hands-on)
- Files and Filetypes for Genomes/Annotation - vcf (talk)
Thursday
- Variant calling tools (talk)
- Variant calling with GATK (hands-on)
- Variant Effect Prediction and Variant Filtering (hands-on)
Friday
List of Software
Side Presentations/Slides
- What is Bioinformatics? (talk)
- Genome Assembly and Annotation (talk)
- Advanced Sequencing and Wet Lab Topics, Lutz Froenicke (talk)
Evaluation!
Please help us improve future workshops, for you and others, by filling out an evaluation.