Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Wednesday, August 12

8:50 am Zoom session starts
9:00 am Welcome, format and expectations
9:30 am Logging in to the cluster, environment, introductions
10:00 am Introduction to the command line
11:30 am Running jobs on a cluster
12:00 pm Lunch
1:00 pm Genomics/Bioinformatics Talk
3:00 pm Data reduction
4:45 pm Recap and homework
5:00 pm Zoom session ends

Thursday, August 13

8:50 am Zoom session starts
9:00 am Recap
11:00 am Cell Preparation Dr. Diana Burkart-Waco, UC Davis DNA Technologies Core
11:30 am Biology at True Resolution: Introduction to Single Cell and Visium Spatial Solutions 10x Genomics
12:00 pm Lunch
1:00 pm Introduction to R and RStudio
3:00 pm Single cell RNA-Seq analysis in Seurat
4:45 pm Recap and homework
5:00 pm Zoom session ends

Friday, August 14

8:50 am Zoom session starts
9:00 am Shiny App for Single Cell RNA-Seq analysis Keith Mitchell, UC Davis Bioinformatics Core
10:30 am Seurat Analysis, continued
12:00 pm Lunch
1:00 pm Seurat analysis, continued
4:30 pm Closing
5:00 pm Zoom session ends