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      Introduction to Analysis of Epigenetic Data 2020

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Introduction
Introduction to the Workshop and the Core
Schedule
What is Bioinformatics/Genomics?
Some Experimental Design?
Support
Slack
Zoom
Cheat Sheets
Software and Links
Scripts
Prerequisites
Introduction to the Command Line
Introduction to R
High Performance Computing
Data Reduction ChIPseq/ATACseq
Filetype Description
ChIP and ATAC project setup
Preprocessing Reads
Mapping Reads
Filtering Reads
Peak Call with MACS2
Data Analysis ChIPseq/ATACseq
Differential ChIPseq
Differential ATACseq
R Package Installation
Methylation
Introduction to WGBS
WGBS hands-on
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website

Software and Links

Linux Terminal:

  1. Shell for Windows 10 tutorial
  2. Enable SSH tutorial OR
  3. MobaXterm
  4. PuTTY

R and RStudio

  1. R project
  2. RStudio Desktop Also see this link if you have trouble installing under Ubuntu