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      Introduction to Analysis of Epigenetic Data 2020

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Introduction
Introduction to the Workshop and the Core
Schedule
What is Bioinformatics/Genomics?
Some Experimental Design?
Support
Slack
Zoom
Cheat Sheets
Software and Links
Scripts
Prerequisites
Introduction to the Command Line
Introduction to R
High Performance Computing
Data Reduction ChIPseq/ATACseq
Filetype Description
ChIP and ATAC project setup
Preprocessing Reads
Mapping Reads
Filtering Reads
Peak Call with MACS2
Data Analysis ChIPseq/ATACseq
Differential ChIPseq
Differential ATACseq
R Package Installation
Methylation
Introduction to WGBS
WGBS hands-on
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website

Closing Thoughts

Prerequisites for bioinformatics

Next Steps

My recommendation is to follow all of the instructions again, from the beginning on your own and send emails to training.bioinformatics@ucdavis.edu And we will be responsive to answering questions

Anticipated 2021 slate of Workshop include

Continuous Workshops

Multiday Broken 1/2 - full day series

Maybe in collaboration with industry partners

For more information on these and other events, and to register, go to https://registration.genomecenter.ucdavis.edu/

Previous Workshops available online

If you would like to take a look at the documentation from previous workshops.

Questions?

Contact us at training.bioinformatics@ucdavis.edu

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