☰ Menu

      Single Cell RNA-Seq Analysis

Home
Introduction and Lectures
Intro to the Workshop and Core
Schedule
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
Support
Slack
Zoom
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
R
Data Reduction
Files and Filetypes
Project setup
Generating Expression Matrix
scRNAseq Analysis
Prepare scRNAseq Analysis
scRNAseq Analysis - PART1
scRNAseq Analysis - PART2
scRNAseq Analysis - PART3
scRNAseq Analysis - PART4
scRNAseq Analysis - PART5
scRNAseq Analysis - PART6
scRNAseq Analysis - PART7
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, December 12

8:50 am Zoom session starts
9:00 am Introductions
10:00 am Intro 2 Command Line
11:30 am 10x Genomics Sponsor Talk
12:00 am Lunch
1:00 pm Using the Cluster
1:45 pm Project Setup
2:15 pm Creating an Expression Matrix
4:30 pm Zoom session ends

Tuesday, December 13

8:50 am Zoom session starts
9:00 am Single Cell library prep talk by Dr. Hong Qiu from the DNATech Core
10:00 am Intro 2 R
11:00 am Installing R Packages
11:30 am Parse BioSciences Sponsor Talk
12:00 pm Lunch
1:00 pm Data setup
1:30 pm Data Analysis Parts 1 - 2
4:30 pm Zoom session ends

Wednesday, December 14

8:50 am Zoom session starts
9:00 am Data Analysis Parts 3 - 4
12:00 pm Lunch
1:00 pm Data Analysis Parts 5 - 7
4:30 pm Zoom session ends