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      RNA-Seq Analysis

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Introduction and Lectures
Intro to the Workshop and Core
Schedule
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
RNA Sequencing Technologies - Dr. Lutz Froenicke
Support
Zoom
Slack
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
R
Data Reduction
Files and Filetypes
Prepare dataset
Preprocessing raw data
Indexing a Genome
Alignment with Star
Generating counts tables
Alignment/Counts with Salmon (Extra)
3' TagSeq
Prokaryotic RNASeq
Data analysis
Annotation from BioMart
Prepare R for data analysis
Differential Expression Analysis
Pathway Analysis
Comparison between STAR and Salmon
ETC
Closing thoughts
Workshop Photos
Github page
Report Errors
Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, June 2

8:50 am Zoom session starts
5:00 pm Zoom session ends

Tuesday, June 3

8:50 am Zoom session starts
11:30 pm Technology talk by Lexogen
5:00 pm Zoom session ends

Wednesday, June 4

8:50 am Zoom session starts
1:00 pm Sequencing technologies and library prep talk by Dr. Lutz Froenicke, Director of DNATech Core at UCDavis
5:00 pm Zoom session ends

Thursday, June 5

8:50 am Zoom session starts
5:00 pm Zoom session ends

Friday, June 6

8:50 am Zoom session starts
5:00 pm Zoom session ends

Workshop blocks

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