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      Spatial Transcriptomics Analysis

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Intro to the Workshop and Core
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Prerequisites
CLI
R
Spatial Transcriptomics
Technologies
Introduction to Data
Part 0- Prepare R Env
Part 1- Data Exploration
Part 2- Clustering
Part 3- Cell type
Part 4- Niche
Part 5- NicheDE
Part 6- CCC
Part 7- Cell Segmmentation

Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, March 24

9:00 am Welcome and introductions
9:30 am Introduction to R
10:00 am Introduction to Spatial Transcriptomics
11:00 am Introduction to data
12:00 pm Lunch
1:00 pm Installing R packages
3:00 pm Data exploration
5:00 pm Zoom session ends

Tuesday, March 25

9:00 am Data Exploration
10:00 am Clustering
12:00 pm Lunch
1:00 pm Clustering
3:00 pm Cell type
5:00 pm Zoom session ends

Wednesday, March 26

9:00 am Niche DE
11:00 am Cell cell interactions
12:00 pm Lunch
1:00 pm Segmentation
5:00 pm Zoom session ends