Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, August 30

8:50 am Zoom session starts
9:00 am Welcome, format and expectations, introductions
9:30 am PacBio Iso-Seq method and Library Prep Kristin Mars, PacBio
10:30 am Introduction to the command line Bioinformatics Core
12:00 pm Lunch
1:00 am Introduction to the command line Bioinformatics Core
2:30 pm Cluster computing and modules Bioinformatics Core
3:00 pm Break
3:15 pm Examining PacBio data (lecture and hands on) Bioinformatics Core
5:00 pm Zoom session ends

Tuesday, August 31

8:50 am Zoom session starts
9:00 am Official PacBio software SMRT Analysis / BioConda (lecture) Dr. Liz Tseng, PacBio
9:30 am Iso-Seq pipeline with Bioconda and visualization using UCSC and IGV (hands on) Dr. Liz Tseng, PacBio
10:30 am Break
11:00 am Cupcake (hands on) Dr. Liz Tseng, PacBio
12:00 pm Lunch
1:00 pm Special Iso-Seq topic (TBA) Dr. Liz Tseng, PacBio
2:45 pm Break
3:00 pm TAMA Richard Kuo, Roslin Institute
5:00 pm Zoom session ends

Wednesday, September 1

8:50 am Zoom session starts
9:00 am TALON & SWAN (demo and hands on) Fairlie Reese, UCI
10:30 am Break
11:00 am SQANTI Dr. Liz Tseng, PacBio
12:00 pm Lunch
1:00 pm IsoAnnot and IsoAnnotLite Bioinformatics Core
2:00 pm tappAS Bioinformatics Core
2:45 pm Break
3:00 pm tappAS Bioinformatics Core
4:30 pm Closing thoughts Bioinformatics Core
5:00 pm Zoom session ends