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      PacBio Iso-Seq Workshop Online

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Introduction
Intro to the Workshop
Schedule
Support
Using Slack in this workshop
Using Zoom in this workshop
Cheat Sheets
Software and Links
Talks
Perspective on Bioinformatics/Genomics?
Iso-Seq Library Prep
Prerequisites
Logging In
CLI
Cluster Computing
Data Reduction
PacBio data
Dr. Liz Tseng
Introduction to PacBio and Iso-Seq
Using the Iso-Seq Application on SMRT Link and BioConda
Tutorial
Richard Kuo
Transcriptome Annotation by Modular Algorithms TAMA
Tutorial
Fairlie Reese
Long-read RNA-seq transcriptomic analysis with TALON and Swan
Tutorial
Download ipython notebook
Conesa Lab
IsoAnnot and IsoAnnotLite
TappAS Install
Hands-on tappAS
ETC
Closing thoughts
Recordings
Github page
Biocore website
Pacific Biosciences website
Conesa lab website

Closing Thoughts

The forest through the trees.

Prerequisites for bioinformatics

The bottom line

Next Steps

My recommendation is to follow all of the instructions again, from the beginning on your own and send emails to training.bioinformatics@ucdavis.edu And we will be responsive to answering questions

Upcoming Workshops

Now in our 14th year of training researchers, the UC Davis Bioinformatics Core invites you to attend one or more of our 2021 and into 2022 workshops. The following workshops are suitable for beginners, and are also of interest to those with data analysis experience.

Sep 13 - Sep 17, 2021 Virtual RNA-Seq Analysis
Oct 18,20,22, 2021 Virtual Introduction to the Command Line for Bioinformatics
Oct 25,27,29, 2021 Virtual Introduction to R for Bioinformatics
Dec 13 - Dec 17, 2021 @Davis Metagenomics and Metatranscriptomics

For more information on these and other events, and to register, go to https://registration.genomecenter.ucdavis.edu/

Previous Workshops available online

If you would like to take a look at the documentation from previous workshops.

Questions?

Contact us at training.bioinformatics@ucdavis.edu

If you receive email directly from training.bioinformatics@ucdavis.edu, you are currently subscribed to one of our announcements lists. To subscribe / unsubscribe from the Bioinformatics Core email lists, please follow the instructions at the bottom of http://bioinformatics.ucdavis.edu/contact-us/.