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      Single Cell RNA-Seq Analysis

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Introduction and Lectures
Intro to the Workshop and Core
Schedule
Talk by Diana Burkhat-Waco from 10x Genomics
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
Support
Zoom
Slack
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
R
Data Reduction
Project setup
Generating Expression Matrix
scRNAseq Analysis
Prepare scRNAseq Analysis
scRNAseq Analysis - PART1
scRNAseq Analysis - PART2
scRNAseq Analysis - PART3
scRNAseq Analysis - PART4
scRNAseq Analysis - PART5
scRNAseq Analysis - PART6
Shiny App Data Explore
Shiny App on AWS (extra)
ETC
Closing thoughts
Github page
Biocore website

Schedule

All posted times are Pacific time zone. At least one break will be provided each morning and afternoon.

Monday, March 22

8:50 am Zoom session starts
9:00 am Introductions
9:30 am Intro 2 Command Line
11:00 am Talk By Diana Burkhart-Waco
12:00 am Lunch and 10X Consult
1:00 pm Using the Cluster
1:45 pm Project Setup
2:15 pm Creating an Expression Matrix
5:00 pm Zoom session ends

Tuesday, March 23

8:50 am Zoom session starts
9:00 am Intro 2 R
11:00 am Installing R Packages
11:30 am Talk By 10X
12:00 pm Lunch and 10X Consult
1:00 pm Data setup
5:00 pm Zoom session ends

Wednesday, March 24

8:50 am Zoom session starts
5:00 pm Zoom session ends