☰ Menu

      UC Davis Bioinformatics Prerequisites Workshop

Home
Introduction
Intro to the Workshop and Core
Getting Connected
What is Bioinformatics/Genomics Perspective?
CLI Intro
Unix & the Command Line
Unix & the Command Line - Challenge Solutions
Environment Variables
Installing Simple Bioinformatics Software
Conda
Clusters & Modules
Advanced CLI
Git Basics
Advanced Command Line Topics
Advanced Challenge Solutions
Using Screen to Manage Multiple Projects (optional)
Intro to R
Introduction to R
Intro to tidyverse and ggplot2 - Prepare
Intro to tidyverse and ggplot2
Linear models in R
Spreadsheets
Working with spreadsheets
Bioinformatics
A Simple Bioinformatics Workflow
Support
Cheat Sheets
Software and Links
Scripts
ETC
Closing thoughts
Workshop Photos
Github
Biocore website

bash shell script

slurm submission script