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        Sept. 2019 Microbial Community Analysis Workshop

Home
Introduction and Lectures
Intro to the Workshop and Core
What is Bioinformatics?
Experimental Design and Cost Estimation
Introduction to Command-Line and the Cluster
Logging in and Transferring Files
Intro to Command-Line
Advanced Command-Line (extra)
Running jobs on the Cluster and using modules
Intro to R and Rstudio
Getting Started
Intro to R
Prepare Data in R (extra)
Data in R (extra)
dbcAmplicons
dbcAmplicons Installing Software
dbcAmplicons - Amplicons talk
dbcAmplicons - Bioinformatics talk
Dataset and Metadata
dbcAmplicons - Data processing
dbcAmplicons w/Dada2
Coming soon
Microbial Community Analysis in R
Prepare MCA Analysis
MCA Analysis in phyloseq
Support
Cheat Sheets
Software and Links
Scripts
ETC
Closing thoughts
Workshop Photos
Github
Biocore website

Closing Thoughts

The forest through the trees.

closing_figure1

Be Consistent

Prerequisites for bioinformatics

The bottom line

Workshop Week 2 reservation

workshop ACTIVE 2019-08-19T00:00:00 2019-09-14T00:00:00 12-00:00:00 rafter-[0,2,8,14,18]

My recommendation is to follow all of the instructions again, from the beginning on your own and send emails to

bioinformatics.training@ucdavis.edu

And we will be responsive to answering questions.

Upcoming Workshops

Now in our 12th year of training researchers, the UC Davis Bioinformatics Core invites you to attend one or more of our 2019 workshops. The following workshops are suitable for beginners, and are also of interest to those with some data analysis experience.

For more information on these and other events, and to register, go to https://registration.genomecenter.ucdavis.edu/

December: Bioinformatics Prerequisites Workshop @ UC Davis

This workshop will cover the basic prerequisites required before performing bioinformatics analysis, including basic command line and high performance computing concepts, how to install software, use help, run applications, and advanced command line (shell scripting, pipes, etc.). Also covered will be basic R programming, basic statistical concepts, and model building. There are no prerequisites for this workshop other than an interest in bioinformatics!

Contact and Notifications

Questions about training? Contact us at training.bioinformatics@ucdavis.edu

To subscribe / unsubscribe from the Bioinformatics Core email lists, please follow the instructions at the bottom of http://bioinformatics.ucdavis.edu/contact-us/.