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      PacBio Iso-Seq Workshop Online

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Introduction
Intro to the Workshop
Schedule
Support
Using Slack in this workshop
Using Zoom in this workshop
Cheat Sheets
Software and Links
Talks
Perspective on Bioinformatics/Genomics?
Iso-Seq Library Prep
Command Line Interface
Logging In and Transferring Files
Intro CLI
Advanced CLI
Advanced CLI Challenge Solutions
Clusters and Modules
Data Reduction
PacBio data
Dr. Liz Tseng
SMRT Sequencing - How it Works
Using the Iso-Seq Application on SMRT Link and BioConda
IsoPhase - Isoform-Level Phasing
Single-Cell RNA Sequencing using the Iso-Seq Method
Tutorial
Richard Kuo
Transcriptome Annotation by Modular Algorithms TAMA
TAMA (hands-on)
Tutorial
Conesa Lab
Installing tappAS
Quality Control and Characterization of LR Transcriptomes
SQANTI3 hands on and IsoAnnot
Hands-on tappAS
ETC
Closing thoughts
Workshop Photos
Github page
Biocore website
Pacific Biosciences website
Conesa lab website

Closing Thoughts

The forest through the trees.

Prerequisites for bioinformatics

The bottom line

Next Steps

My recommendation is to follow all of the instructions again, from the beginning on your own and send emails to training.bioinformatics@ucdavis.edu And we will be responsive to answering questions

Upcoming Workshops

Now in our 13th year of training researchers, the UC Davis Bioinformatics Core invites you to attend one or more of our 2020 workshops. The following workshops are suitable for beginners, and are also of interest to those with some data analysis experience.

Oct 5 - Oct 9, 2020 Bioinformatics: Command Line/R Prerequisites
Nov 30 - Dec 4, 2020 Introduction to Analysis of Epigenetic Data

For more information on these and other events, and to register, go to https://registration.genomecenter.ucdavis.edu/

Previous Workshops available online

If you would like to take a look at the documentation from previous workshops.

Questions?

Contact us at training.bioinformatics@ucdavis.edu

If you receive email directly from training.bioinformatics@ucdavis.edu, you are currently subscribed to one of our announcements lists. To subscribe / unsubscribe from the Bioinformatics Core email lists, please follow the instructions at the bottom of http://bioinformatics.ucdavis.edu/contact-us/.