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      Microbial Community Analysis (amplicons)

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Introduction and Lectures
Intro to the Workshop and Core
Schedule
What is Bioinformatics/Genomics?
Generating Microbial Amplicons
Support
Zoom
Slack
Cheat Sheets
Software and Links
Scripts
Prerequisites
CLI
Introduction to R
High Performance Computing
Data Reduction
Filetype Description
MCA project setup
Preprocessing Reads
ASV production
Data Analysis
Prepare Analysis
MCA Part 1
MCA Part 2
MCA Part 3
MCA Part 4
MCA Part 5
MCA Part 6
ETC
Closing thoughts
Github page
Biocore website

Closing Thoughts

The forest through the trees.

flowchart2

Be Consistent

Prerequisites for bioinformatics

The bottom line

Next Steps

My recommendation is to follow all of the instructions again, from the beginning on your own and send emails to training.bioinformatics@ucdavis.edu And we will be responsive to answering questions

Upcoming Workshops

Check out our upcoming course offerings!

Previous Workshops available online

If you would like to take a look at the documentation from previous workshops.

Questions?

Contact us at training.bioinformatics@ucdavis.edu

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