| Home | Introduction and Lectures |
|---|
| Intro to the Workshop and Core |
| What is Bioinformatics/Genomics Perspective? |
| Experimental Design and Cost Estimation | Introduction to Command-Line and the Cluster |
| Logging in and Transferring Files |
| Intro to Command-Line |
| Advanced Command-Line (extra) |
| Running jobs on the Cluster and using modules | Intro to R and Rstudio |
| Getting Started |
| Intro to R |
| Prepare Data in R (extra) |
| Data in R (extra) | Data Reduction |
| Project setup |
| Generating Expression Matrix | scRNAseq Analysis |
| Prepare scRNAseq Analysis |
| scRNAseq Analysis - PART1 |
| scRNAseq Analysis - PART2 |
| scRNAseq Analysis - PART3 |
| scRNAseq Analysis - PART4 |
| scRNAseq Analysis - PART5 |
| scRNAseq Analysis - PART6 | Guest lecture by Dr. Gerald Quon |
| Prepare Single Cell Alignment |
| Single Cell Alignment (scAlign) | Support |
| Cheat Sheets |
| Software and Links |
| Scripts | ETC |
| Closing thoughts |
| Workshop Photos |
| Github |
| Biocore website |