Quick Introduction to the Workshop and Core

The mission of the Bioinformatics Core facility is to facilitate outstanding omics-scale research through these activities:

Staff

Contacts

• Bioinformatics related questions, include but not limited to bioinformatic methods questions, software use, data questions.
  • Bioinformatics.core@ucdavis.edu
• Computing Issues, include but not limited to user account questions, equipment failure/malfunction, software install, software failures (not related to use)
  • helpdesk@genomecenter.ucdavis.edu
• Training courses information
  • training.bioinformatics@ucdavis.edu

  Workshop Goals

  • End to End understanding of scRNAseq Analysis
    • Discussions/lectures
    • Technologies
    • Experimental design
    • Cost estimation
    • Workflow
    • scRNA gene expression analysis
  • To work through a complete experiment, starting from raw data to completion, including making a few figures.
  • Goal is 30-40% lecture/discussion 60-70% hands-on

  Internet

  Eduroam

  Many academic (and some non-academic) institutions are a part of Eduroam. (See “List of Institutions” under “Members” at https://www.eduroam.us/ to find out if your institution is a member.) Please make sure you can log into Eduroam with your device at your home institution, which will make things easier once you come to UCSF.

  If your institution is not a member of Eduroam, you can still access the open wireless through “UCSF guest”.

  UCSF Guest Wireless

  You will need to access the UCSF wireless via your laptop to participate in the hands-on exercises. Please review https://it.ucsf.edu/services/ucsfguest-open-wireless for access instructions.

  Workshop Materials

  Workshop materials are all posted on github, and publicly available

  http://bioinformatics.ucdavis.edu/training/events/

  • Github main page:

    https://github.com/ucdavis-bioinformatics-training

  • This scRNAseq Workshop

    https://ucdavis-bioinformatics-training.github.io/2019-Fall-single-cell-RNA-sequencing-Workshop-UCSF/

    https://github.com/ucdavis-bioinformatics-training/2019-Fall-single-cell-RNA-sequencing-Workshop-UCSF/

  Computing Cluster

  Course will be conducted on our servers and compute cluster .
  tadpole.genomecenter.ucdavis.edu

  Everyone should get an account.
  https://computing.genomecenter.ucdavis.edu

  Request an account -> sponsor “Bioinformatics Core Workshop”

  If you already have an account on our system, then please do NOT create a new account and instead tell us your username and we will add you to the workshop.

  This course does not utilize the cluster.

  Industry Sponsors Lunch and Learn

  • Celsee
  • Takara
  • 10X Genomics